disambiguate: Convert oligonucleotide sequences into regular expressions.
In insect: Informatic Sequence Classification Trees
disambiguate R Documentation
Convert oligonucleotide sequences into regular expressions.
Description
This function is used to convert an oligonucleotide sequence into a regular
expression that can be used to query a sequence dataset.
This is generally used for finding and removing primer,
adapter and/or index sequences.
Usage
disambiguate(z)
Arguments
z
a concatenated string representing a DNA oligonucleotide sequence,
possibly with IUPAC ambiguity codes (all in upper case).
Value
a regular expression.
Author(s)
Shaun Wilkinson
Examples
disambiguate("GGWACWGGWTGAACWGTWTAYCCYCC")
insect documentation built on June 8, 2025, 10:37 a.m.
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| disambiguate | R Documentation |
Convert oligonucleotide sequences into regular expressions.
Description
This function is used to convert an oligonucleotide sequence into a regular expression that can be used to query a sequence dataset. This is generally used for finding and removing primer, adapter and/or index sequences.
Usage
disambiguate(z)
Arguments
z |
a concatenated string representing a DNA oligonucleotide sequence, possibly with IUPAC ambiguity codes (all in upper case). |
Value
a regular expression.
Author(s)
Shaun Wilkinson
Examples
disambiguate("GGWACWGGWTGAACWGTWTAYCCYCC")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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