disambiguate: Convert oligonucleotide sequences into regular expressions.
In insect: Informatic Sequence Classification Trees
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function is used to convert an oligonucleotide sequence into a regular
expression that can be used to query a sequence dataset.
This is generally used for finding and removing primer,
adapter and/or index sequences.
Usage
1
disambiguate(z)
Arguments
z
a concatenated string representing a DNA oligonucleotide sequence,
possibly with IUPAC ambiguity codes (all in upper case).
Value
a regular expression.
Author(s)
Shaun Wilkinson
Examples
1
disambiguate("GGWACWGGWTGAACWGTWTAYCCYCC")
insect documentation built on Aug. 9, 2021, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
This function is used to convert an oligonucleotide sequence into a regular expression that can be used to query a sequence dataset. This is generally used for finding and removing primer, adapter and/or index sequences.
Usage
1 | disambiguate(z)
|
Arguments
z |
a concatenated string representing a DNA oligonucleotide sequence, possibly with IUPAC ambiguity codes (all in upper case). |
Value
a regular expression.
Author(s)
Shaun Wilkinson
Examples
1 | disambiguate("GGWACWGGWTGAACWGTWTAYCCYCC")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.