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# Survival and censored models ---------------------------------------------
#' @export
get_parameters.flexsurvreg <- function(x, ...) {
cf <- stats::coef(x)
params <- data.frame(
Parameter = names(cf),
Estimate = unname(cf),
stringsAsFactors = FALSE,
row.names = NULL
)
text_remove_backticks(params)
}
#' @export
get_parameters.aareg <- function(x, ...) {
sc <- summary(x)
params <- data.frame(
Parameter = rownames(sc$table),
Estimate = unname(sc$table[, 2]),
stringsAsFactors = FALSE,
row.names = NULL
)
text_remove_backticks(params)
}
#' @export
get_parameters.crr <- function(x, ...) {
sc <- x$coef
params <- data.frame(
Parameter = names(sc),
Estimate = unname(sc),
stringsAsFactors = FALSE,
row.names = NULL
)
text_remove_backticks(params)
}
#' @export
get_parameters.lmodel2 <- function(x, ...) {
res <- x$regression.results
out <- as.data.frame(cbind(Method = rep(res$Method, 2), utils::stack(res, select = 2:3)))
colnames(out) <- c("Component", "Estimate", "Parameter")
out[c("Parameter", "Estimate", "Component")]
}
#' @export
get_parameters.rqs <- function(x, ...) {
sc <- suppressWarnings(summary(x))
if (all(unlist(lapply(sc, is.list)))) {
list_sc <- lapply(sc, function(i) {
.x <- as.data.frame(stats::coef(i))
.x$Parameter <- rownames(.x)
.x$tau <- i$tau
.x
})
out <- do.call(rbind, list_sc)
params <- data.frame(
Parameter = out$Parameter,
Estimate = out$coefficients,
Component = sprintf("tau (%g)", out$tau),
stringsAsFactors = FALSE,
row.names = NULL
)
} else {
get_parameters.default(x, ...)
}
text_remove_backticks(params)
}
#' @export
get_parameters.crq <- function(x, ...) {
sc <- summary(x)
if (all(unlist(lapply(sc, is.list)))) {
list_sc <- lapply(sc, function(i) {
.x <- as.data.frame(i)
.x$Parameter <- rownames(.x)
.x
})
out <- do.call(rbind, list_sc)
params <- data.frame(
Parameter = out$Parameter,
Estimate = out$coefficients.Value,
Component = sprintf("tau (%g)", out$tau),
stringsAsFactors = FALSE,
row.names = NULL
)
} else {
params <- data.frame(
Parameter = names(sc$coefficients[, 1]),
Estimate = unname(sc$coefficients[, 1]),
stringsAsFactors = FALSE,
row.names = NULL
)
}
text_remove_backticks(params)
}
#' @export
get_parameters.crqs <- get_parameters.crq
#' @export
get_parameters.lqmm <- function(x, ...) {
cs <- stats::coef(x)
if (is.matrix(cs)) {
params <- .gather(as.data.frame(cs), names_to = "Component", values_to = "Estimate")
params$Component <- sprintf("tau (%s)", params$Component)
params$Parameter <- rep(rownames(cs), length.out = nrow(params))
params <- params[c("Parameter", "Estimate", "Component")]
row.names(params) <- NULL
} else {
params <- data.frame(
Parameter = names(cs),
Estimate = unname(cs),
stringsAsFactors = FALSE,
row.names = NULL
)
}
text_remove_backticks(params)
}
#' @export
get_parameters.lqm <- get_parameters.lqmm
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