ioncopy: Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Package details

AuthorJan Budczies, Eva Romanovsky
MaintainerJan Budczies <[email protected]>
LicenseGPL-3
Version2.1.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("ioncopy")

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ioncopy documentation built on March 24, 2018, 1:03 a.m.