Man pages for ioncopy
Calling Copy Number Alterations in Amplicon Sequencing Data
| assess.CNA | Significance assessment of copy number alterations |
| calculate.CN | Calculation of copy numbers |
| call.CNA | Gene-wise or amplicon-wise calling of copy number alterations |
| coverage | Coverage data of 154 amplicons in 184 breast carcinomas |
| heatmap.CNA | Visualization of Copy Number and CNA Calls |
| ioncopy-package | Calling copy number alterations in amplicon sequencing data |
| read.coverages | Helper function to read coverages from file system |
| runIoncopy | Shiny app for Ioncopy |
| summarize.CNA | Summary of CNA calls |
