Man pages for ioncopy
Calling Copy Number Alterations in Amplicon Sequencing Data

assess.CNASignificance assessment of copy number alterations
calculate.CNCalculation of copy numbers
call.CNAGene-wise or amplicon-wise calling of copy number alterations
coverageCoverage data of 154 amplicons in 184 breast carcinomas
heatmap.CNAVisualization of Copy Number and CNA Calls
ioncopy-packageCalling copy number alterations in amplicon sequencing data
read.coveragesHelper function to read coverages from file system
runIoncopyShiny app for Ioncopy
summarize.CNASummary of CNA calls
ioncopy documentation built on March 24, 2018, 1:03 a.m.