Description Usage Arguments Value Examples
Starting from a matrix of coverages, the corresponding matrix of copy numbers is calculated. The caluculation includes a sample normalization step and a amplicon normalization step.
1 | calculate.CN(coverage, scale.amplicon=NULL)
|
coverage |
A numeric matrix containing the coverages of each amplicon (rows) in each sample (columns). |
scale.amplicon |
Method for amplicon normalization. If |
Matrix of copy numbers with the amplicon scaling factors ("scale.amplicon"
) as attribute.
1 2 3 4 5 | ## Not run:
data(coverage)
CN <- calculate.CN(coverage)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.