Description Details Author(s) References
Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls.
Package: | ioncopy |
Type: | Package |
Version: | 2.2.2 |
Date: | 2020-08-07 |
License: | GPL-3 |
Maintainer: Jan Budczies <jan.budczies@med.uni-heidelberg.de>
Eva Romanovsky <eva.romanovsky@rambler.ru>
Jan Budczies, Nicole Pfarr, Albrecht Stenzinger, Denise Treue, Volker Endris, Fakher Ismaeel, Nikola Bangemann, Jens-Uwe Blohmer, Manfred Dietel, Sibylle Loibl, Wilko Weichert, Carsten Denkert: Ioncopy: a novel method for calling copy number alterations in amplicon sequencing data including significance assessment. Oncotarget 7(11):13236-47, 2016, doi: 10.18632/oncotarget.7451.
Jan Budczies, Nicole Pfarr, Eva Romanovsky, Volker Endris, Albrecht Stenzinger, and Carsten Denkert: Ioncopy: an R Shiny app to call copy number alterations in targeted NGS data. Submitted.
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