Description Usage Arguments Value
View source: R/read.coverages.R
Coverages are read from tab separated files and stored in a coverage matrix. All coverage files need to refer to the same panel of targets.
1 | read.coverages(chip.names, file.names, anno.col="Target")
|
chip.names |
A character vector comprizing the chip names. |
file.names |
A character vector compizing the names of tab separated files. Each file should contain the coverages of the same sequencing panel (rows) in a cohort of samples (columns). |
anno.col |
The column in input files that compizes the names of the targets. The targets must belong to the same sequencing panel for all input files. |
Matrix of coverages of each target sequence (rows) in each sample (colums).
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