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#' PARA_SD (class level)
#'
#' @description Standard deviation perimeter-area ratio (Shape metric)
#'
#' @param landscape A categorical raster object: SpatRaster; Raster* Layer, Stack, Brick; stars or a list of SpatRasters.
#' @param directions The number of directions in which patches should be
#' connected: 4 (rook's case) or 8 (queen's case).
#'
#' @details
#' \deqn{PARA_{SD} = sd(PARA[patch_{ij}]}
#' where \eqn{PARA[patch_{ij}]} is the perimeter area ratio of each patch.
#'
#' PARA_SD is a 'Shape metric'. It summarises each class as the standard deviation of
#' each patch belonging to class i. The perimeter-area ratio describes the patch complexity
#' in a straightforward way. However, because it is not standarised to a certain shape
#' (e.g. a square), it is not scale independent, meaning that increasing the patch size
#' while not changing the patch form will change the ratio.
#'
#' Because the metric is based on distances or areas please make sure your data
#' is valid using \code{\link{check_landscape}}.
#'
#' \subsection{Units}{None}
#' \subsection{Range}{PARA_SD >= 0}
#' \subsection{Behaviour}{Equals PARA_SD = 0 if the perimeter-area ratio is identical for
#' all patches. Increases, without limit, as the variation of the perimeter-area ratio
#' increases.}
#'
#' @seealso
#' \code{\link{lsm_p_para}},
#' \code{\link[stats]{sd}} \cr
#' \code{\link{lsm_c_para_mn}},
#' \code{\link{lsm_c_para_cv}}, \cr
#' \code{\link{lsm_l_para_mn}},
#' \code{\link{lsm_l_para_sd}},
#' \code{\link{lsm_l_para_cv}}
#'
#' @return tibble
#'
#' @examples
#' landscape <- terra::rast(landscapemetrics::landscape)
#' lsm_c_para_sd(landscape)
#'
#' @references
#' McGarigal K., SA Cushman, and E Ene. 2023. FRAGSTATS v4: Spatial Pattern Analysis
#' Program for Categorical Maps. Computer software program produced by the authors;
#' available at the following web site: https://www.fragstats.org
#'
#' @export
lsm_c_para_sd <- function(landscape, directions = 8) {
landscape <- landscape_as_list(landscape)
result <- lapply(X = landscape,
FUN = lsm_c_para_sd_calc,
directions = directions)
layer <- rep(seq_along(result),
vapply(result, nrow, FUN.VALUE = integer(1)))
result <- do.call(rbind, result)
tibble::add_column(result, layer, .before = TRUE)
}
lsm_c_para_sd_calc <- function(landscape, directions, resolution, extras = NULL){
para <- lsm_p_para_calc(landscape,
directions = directions,
resolution = resolution,
extras = extras)
# all cells are NA
if (all(is.na(para$value))) {
return(tibble::new_tibble(list(level = "class",
class = as.integer(NA),
id = as.integer(NA),
metric = "para_sd",
value = as.double(NA))))
}
para_sd <- stats::aggregate(x = para[, 5], by = para[, 2],
FUN = stats::sd)
return(tibble::new_tibble(list(level = rep("class", nrow(para_sd)),
class = as.integer(para_sd$class),
id = rep(as.integer(NA), nrow(para_sd)),
metric = rep("para_sd", nrow(para_sd)),
value = as.double(para_sd$value))))
}
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