Man pages for ldlasso
LD LASSO Regression for SNP Association Study
| block.bounds | Creates a vector of haplotype block boundary basepair... |
| block.cood | Vector of Haplotype Block Boundaries |
| block.map.matrix | Creates an indicator matrix for haplotype block boundaries,... |
| block.obj | GenABEL Object with Genotype and Phenotype Data |
| chi2 | Creates a vector of chi-squared values from the allelic test... |
| get.cp | Uses bootstrap sampling over a vector of LD LASSO constraint... |
| get.s1 | Finds an estimate for s1 based on an estimate of the expected... |
| heatmap | Plots the heat map for the LD LASSO solution space |
| ld_lasso | The main function of the LD LASSO method |
| ld_lasso_method | The LD LASSO function |
| ldlasso.obj | LD LASSO Object created by the function ld_lasso_method |
| ldlasso-package | LD LASSO for Case Control Genetic Association Study |
| p0tos1 | Finds the LASSO parameter s1 that corresponds to desired... |
| plot_beta | Plot the LD LASSO solution by physical position. |
| plot_ldlasso | Diagnostic plot for an ldlasso object |
| r2.cut.fn | Find the r-squared cutoff |
| trace.plot | Creates a trace plot for the LD LASSO |
