LD LASSO Regression for SNP Association Study

block.bounds | Creates a vector of haplotype block boundary basepair... |

block.cood | Vector of Haplotype Block Boundaries |

block.map.matrix | Creates an indicator matrix for haplotype block boundaries,... |

block.obj | GenABEL Object with Genotype and Phenotype Data |

chi2 | Creates a vector of chi-squared values from the allelic test... |

get.cp | Uses bootstrap sampling over a vector of LD LASSO constraint... |

get.s1 | Finds an estimate for s1 based on an estimate of the expected... |

heatmap | Plots the heat map for the LD LASSO solution space |

ld_lasso | The main function of the LD LASSO method |

ld_lasso_method | The LD LASSO function |

ldlasso.obj | LD LASSO Object created by the function ld_lasso_method |

ldlasso-package | LD LASSO for Case Control Genetic Association Study |

p0tos1 | Finds the LASSO parameter s1 that corresponds to desired... |

plot_beta | Plot the LD LASSO solution by physical position. |

plot_ldlasso | Diagnostic plot for an ldlasso object |

r2.cut.fn | Find the r-squared cutoff |

trace.plot | Creates a trace plot for the LD LASSO |

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