pedigrees_all_populate_autosomal: Populate 1-locus autosomal DNA profile in pedigrees with...

In malan: MAle Lineage ANalysis

Populate 1-locus autosomal DNA profile in pedigrees with single-step mutation model.

Description

Populate 1-locus autosomal DNA profile from founder and down in all pedigrees. Note, that only alleles from ladder is assigned and that all founders draw type randomly.

Usage

pedigrees_all_populate_autosomal(
  pedigrees,
  allele_dist,
  theta,
  mutation_rate,
  progress = TRUE
)

Arguments

pedigrees	Pedigree list in which to populate genotypes
allele_dist	Allele distribution (probabilities) – gets normalised
theta	Theta correction between 0 and 1 (both included)
mutation_rate	Mutation rate between 0 and 1 (both included)
progress	Show progress

Details

Note, that pedigrees must first have been inferred by build_pedigrees().

See Also

pedigrees_all_populate_haplotypes_custom_founders() and pedigrees_all_populate_haplotypes_ladder_bounded().

malan documentation built on Aug. 21, 2025, 5:53 p.m.