population_populate_autosomal_infinite_alleles: Populate 1-locus autosomal DNA profile in pedigrees with...

In malan: MAle Lineage ANalysis

Populate 1-locus autosomal DNA profile in pedigrees with infinite alleles mutation model.

Description

Populate 1-locus autosomal DNA profile from founder and down in all pedigrees. Note, that all founders have type 0 to begin with.

Usage

population_populate_autosomal_infinite_alleles(
  population,
  mutation_rate,
  progress = TRUE
)

Arguments

population	Population in which to populate genotypes
mutation_rate	Mutation rate between 0 and 1 (both included)
progress	Show progress

Details

The maternal allele is taken by random from the 2*N[g] alleles in the previous generation consisting of N[g] males with descendants in the live population.

This is also why this is not using pedigrees but instead the population.

Note, that pedigrees need not be inferred.

See Also

pedigrees_all_populate_haplotypes_custom_founders() and pedigrees_all_populate_haplotypes_ladder_bounded().

malan documentation built on July 4, 2024, 9:09 a.m.