API for meaRtools
Micro-Electro Array (MEA) Analysis
| Global functions | |
|---|---|
| .active_wells_network_spikes | Source code |
| .apply_perm_and_plot | Source code |
| .as_data_frame_network_spikes | Source code |
| .axion_elec_name_to_xy | Source code |
| .axion_elec_to_well | Source code |
| .axion_electrodes_on_well | Source code |
| .axion_guess_well_number | Source code |
| .axion_spike_sum | Source code |
| .axion_spikes_to_df | Source code |
| .bin_distances | Source code |
| .calc_all_ibi | Source code |
| .calc_all_isi | Source code |
| .calc_ibi | Source code |
| .calculate_entropy_by_well | Source code |
| .channel_plot_by_well | Source code |
| .check_spikes_monotonic | Source code |
| .compile_ns | Source code |
| .compute_ns | Source code |
| .construct_s | Source code |
| .corr_do_fit | Source code |
| .corr_get_means | Source code |
| .corr_index | Source code |
| .correlation | Source code |
| .create_feat_df | Source code |
| .dist_electrode_pair | Source code |
| .electrode_dist_pairs | Source code |
| .entropies_per_well | Source code |
| .entropy | Source code |
| .entropy_electrode | Source code |
| .euc_dist | Source code |
| .extract_rows | Source code |
| .filter_channel_names | Source code |
| .filter_list | Source code |
| .filter_spikes_r_object | Source code |
| .find_halfmax | Source code |
| .find_peaks | Source code |
| .get_all_electrodes | Source code |
| .get_array_info | Source code |
| .get_bin_fullset | Source code |
| .get_bin_sizes | Source code |
| .get_div | Source code |
| .get_electrode_layout | Source code |
| .get_mean_burst_info_per_well | Source code |
| .graythresh | Source code |
| .iqr_range | Source code |
| .kl_divergence | Source code |
| .list_to_vals | Source code |
| .make_distances | Source code |
| .make_spikes_to_frate | Source code |
| .mann_whit_perm | Source code |
| .mea_vals_subset | Source code |
| .mean_burst_summary | Source code |
| .mean_ns | Source code |
| .mutual_information | Source code |
| .my_upper | Source code |
| .names_to_indexes | Source code |
| .nb_extract_features | Source code |
| .nb_gaussian_filter | Source code |
| .nb_get_burst_stats_intensities | Source code |
| .nb_get_spike_stats | Source code |
| .nb_merge_result | Source code |
| .nb_prepare | Source code |
| .nb_select_and_bin | Source code |
| .num_bursts | Source code |
| .p_bins | Source code |
| .pairwise_dists_per_well | Source code |
| .pdist_electrode_spikes | Source code |
| .plot_burst_info | Source code |
| .plot_feature | Source code |
| .plot_isis_by_electrode | Source code |
| .plot_isis_by_plate | Source code |
| .plot_mealayout | Source code |
| .plot_mean_firingrate_by_electrode | Source code |
| .plot_meanfiringrate | Source code |
| .plot_spike_list | Source code |
| .print_spike_list | Source code |
| .r_object_read_spikes | Source code |
| .si_find_burst2 | Source code |
| .sort_df | Source code |
| .spike_simulation | Source code |
| .spike_summary_by_electrode | Source code |
| .spike_summary_by_well | Source code |
| .spikes_in_bins | Source code |
| .spikes_to_bursts | Source code |
| .spikes_to_count2 | Source code |
| .spk_list_2_list | Source code |
| .spk_list_to_r_object | Source code |
| .summary_ns | Source code |
| .summary_spike_list | Source code |
| .surprise | Source code |
| .test_entropy_funcs | Source code |
| .test_entropy_funcs_mea | Source code |
| .tiling_allpairwise | Source code |
| .trim_trailing | Source code |
| .uniform_bins | Source code |
| .wells_subset | Source code |
| .wilcox_test_perm | Source code |
| .write_burst_summary | Source code |
| .write_network_spike_summary | Source code |
| .write_spike_summary | Source code |
| S | Man page |
| add_plateinfo | Man page Source code |
| aggregate_features | Man page Source code |
| calc_burst_distributions | Man page Source code |
| calc_burst_summary | Man page Source code |
| calculate_burst_features | Man page Source code |
| calculate_entropy_and_mi | Man page Source code |
| calculate_isis | Man page Source code |
| calculate_network_bursts | Man page Source code |
| calculate_network_spikes | Man page Source code |
| calculate_spike_features | Man page Source code |
| compute_mean_firingrate_by_well | Man page Source code |
| compute_mean_sttc_by_well | Man page Source code |
| compute_sttc_by_well | Man page Source code |
| count_ns | Man page Source code |
| dist_perm | Man page Source code |
| filter_nonactive_spikes | Man page Source code |
| filter_wells | Man page Source code |
| frate_counts | Man page Source code |
| generate_raster_plot | Man page Source code |
| get_burst_info | Man page Source code |
| get_data | Man page Source code |
| get_experimental_log_file | Man page Source code |
| get_file_basename | Man page Source code |
| get_num_ae | Man page Source code |
| get_plateinfo | Man page Source code |
| get_project_plate_name | Man page Source code |
| get_wt | Man page Source code |
| has_network_spikes | Man page Source code |
| isi | Man page Source code |
| load_spikelist | Man page Source code |
| mi_find_bursts | Man page Source code |
| nb_matrix_to_feature_dfs | Man page Source code |
| parameters | Man page |
| permute_features_and_plot | Man page Source code |
| plateinfo | Man page |
| plot.sttcp | Man page Source code |
| plot_active_wells_network_spikes | Man page Source code |
| plot_mean_firingrate_by_eletrode_by_div | Man page Source code |
| plot_mean_firingrate_by_well_by_div | Man page Source code |
| plot_network_spikes | Man page Source code |
| plot_plate_summary_for_bursts | Man page Source code |
| plot_plate_summary_for_spikes | Man page Source code |
| publications | Man page Source code |
| read_spikelist | Man page Source code |
| read_spikelist_text | Man page Source code |
| remove_spikes | Man page Source code |
| run_TMcpp | Man page Source code |
| si_find_bursts | Man page Source code |
| sttc | Man page Source code |
| sttc_allspikes1 | Man page Source code |
| sttcp | Man page Source code |
| sttcp_ab | Man page Source code |
| summarize_network_spikes | Man page Source code |
| tiling_correlogramcpp | Man page Source code |
| tiling_correlogramcpp_index | Man page Source code |
| write_features_to_files | Man page Source code |
| write_network_spikes_to_csv | Man page Source code |
| write_plate_summary_for_bursts | Man page Source code |
| write_plate_summary_for_spikes | Man page Source code |
| xyplot_network_spikes | Man page Source code |
