S: example 'S' object

Description Usage Format Details Examples

Description

An example 'S' list object containing multiple fields describing 1 minute recording on a 48 well plate.

Usage

1
data("S")

Format

channels

electrode names

spikes

a list of spike trains for each channel

nspikes

# spikes for each channel

NCells

total # electrodes

meanfiringrate

mean firing rate by channel

file

full path of file

layout

electrodes grid positions for all electrodes on plate

rates

list with average count and firing per time_interval (s) as well as plate average

rec_time

2 element vector of first and last spike time of recording

goodwells

well names for all wells meeting minimum firing criteria

treatment

treatments for each well

size

chemical compound size for each treatment

units

units of dose of treatment

dose

dose of treatment

well

well names

nae

# active electrodes (firing>5spikes/min)

cw

wells that each channel belongs to

parameters

A list of parameters, see data("parameters")

allb

for each electrode, a matrix of burst related information

bs

burst summary, a data frame containing burst endpoints by electrode

ns_all

for each well, a list of network spike information

isis

list of inter-spike interval (isi) (s) by channel

mean_isis

list of average isi by channel

sd_isis

list of standard deviation of isi by channel

well_stats

data frame containing well level firing rate information

Details

Created by use of functions available in package.

Examples

1
2
data('S')
names(S)

meaRtools documentation built on May 1, 2019, 7:32 p.m.