compute_mean_sttc_by_well: Compute the mean STTC averaged across all pairwise electrodes...
In meaRtools: Micro-Electro Array (MEA) Analysis
Description
Usage
Arguments
Details
Value
Author(s)
Description
Compute the mean STTC averaged across all pairwise electrodes in well
Usage
1
compute_mean_sttc_by_well(s, dt = 0.05, beg = NULL, end = NULL)
Arguments
s
structure storing the well information
dt
Time window for STTC (default = 0.05 seconds)
beg
Start time in seconds (defaults to start of recording)
end
End time in seconds (defaults to end of recording)
Details
For each pair of electrodes, we calculate the STTC. We then take
the mean of these pairs, excluding autocorrelations. If a well has
one (or no) electrodes, the value returned for that well is NULL.
Warning: taking the mean over a well is useful only if you do not
suspect distance-dependent correlations in your firing. (For
activity like retinal waves, we find that correlations are
strongly dependent on the distance separating electrodes.)
Value
A vector giving the mean of all pairwise STTCs on each well.
Author(s)
Stephen Eglen
meaRtools documentation built on May 1, 2019, 7:32 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Compute the mean STTC averaged across all pairwise electrodes in well
Usage
1 | compute_mean_sttc_by_well(s, dt = 0.05, beg = NULL, end = NULL)
|
Arguments
s |
structure storing the well information |
dt |
Time window for STTC (default = 0.05 seconds) |
beg |
Start time in seconds (defaults to start of recording) |
end |
End time in seconds (defaults to end of recording) |
Details
For each pair of electrodes, we calculate the STTC. We then take the mean of these pairs, excluding autocorrelations. If a well has one (or no) electrodes, the value returned for that well is NULL.
Warning: taking the mean over a well is useful only if you do not suspect distance-dependent correlations in your firing. (For activity like retinal waves, we find that correlations are strongly dependent on the distance separating electrodes.)
Value
A vector giving the mean of all pairwise STTCs on each well.
Author(s)
Stephen Eglen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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