Man pages for meaRtools
Micro-Electro Array (MEA) Analysis
| add_plateinfo | Provide information about a new MEA plate format. |
| aggregate_features | Aggregate Feature Data |
| calc_burst_distributions | calculate and plot burst featues distributions |
| calc_burst_summary | Calculate average and standard deviation of the bursting... |
| calculate_burst_features | Filter spikes and bursts in recording objects |
| calculate_entropy_and_mi | Calculate Entropy and mututal information for each treatment... |
| calculate_isis | Calculate inter spike intervals |
| calculate_network_bursts | Compute network bursts for a list of MEA recordings. |
| calculate_network_spikes | Compute the netwrok spikes statistics from spike lists. |
| calculate_spike_features | Filter spikes and bursts in recording objects |
| compute_mean_firingrate_by_well | mean.firingrate.by.well |
| compute_mean_sttc_by_well | Compute the mean STTC averaged across all pairwise electrodes... |
| compute_sttc_by_well | Compute the STTC across all pairwise electrodes in well |
| count_ns | Count number of spikes within evenly spaced time... |
| dist_perm | Burst distribution permutations |
| filter_nonactive_spikes | Filter nonactive spikes from recordings |
| filter_wells | Filter wells |
| frate_counts | Estimate population firing rate using fixed-width time bins. |
| generate.raster.plot | generate_raster_plot |
| get_burst_info | get burst feature information |
| get_data | get_data |
| get_experimental_log_file | get_experimental_log_file |
| get_file_basename | get_file_basename |
| get_num_ae | get_num_ae |
| get_plateinfo | Return information about an MEA plate format |
| get_project_plate_name | get_project_plate_name |
| get_wt | Get WT |
| has_network_spikes | A utility function to check if network spikes are detected. |
| IGM.plot.active.wells.network.spikes | plot_active_wells_network_spikes |
| isi | isi |
| load_spikelist | Load Robject File |
| mi_find_bursts | Find bursts |
| nb_matrix_to_feature_dfs | Convert network burst data matrix to a list of data frames. |
| parameters | A list of parameters with default values that user can... |
| permute_features_and_plot | Write PDF |
| plateinfo | MEA plate information |
| plot_mean_firingrate_by_eletrode_by_div | plot.mean.firingrate.by.eletrode.by.div |
| plot_mean_firingrate_by_well_by_div | plot.mean.firingrate.by.well.by.div |
| plot_network_spikes | Generic method for plotting network spikes. |
| plot_plate_summary_for_bursts | Plot burst features |
| plot_plate_summary_for_spikes | plot.plate.summary.for.spikes |
| plot.sttcp | Plot the STTCP |
| publications | Show list of publications that have used this package |
| read_spikelist | Axion convert spk_list to r_object |
| read_spikelist_text | Construct an MEA object by importing from text files. |
| remove_spikes | remove_spikes |
| run_TMcpp | Compute STCC direct in Cpp |
| S | example 'S' object |
| si_find_bursts | Find bursts |
| sttc | Compute STTC for a pair of spike trains |
| sttc_allspikes1 | Compute STTC for all pairs of spike trains |
| sttcp | Compute |
| sttcp_ab | Compute STTC profile for two spike trains |
| summarize_network_spikes | Generate network spikes based features. |
| tiling_correlogramcpp | Compute all STTPs for a set of spike trains |
| tiling_correlogramcpp_index | Compute STTPs for just two spike trains, A and B |
| write_features_to_files | Write feature data to an output file |
| write_network_spikes_to_csv | Summarize and write netowrk spikes features into a csv file. |
| write_plate_summary_for_bursts | Prints bursting features |
| write_plate_summary_for_spikes | write_plate_summary_for_spikes |
| xyplot_network_spikes | xyplot for network spikes at the plate level. |
