cal_module: Assign modules to each network

In meconetcomp: Compare Microbial Networks of 'trans_network' Class of 'microeco' Package

Assign modules to each network

Description

Calculating modularity of networks and assign the modules to nodes for each network.

Usage

cal_module(
  network_list,
  undirected_method = "cluster_fast_greedy",
  directed_method = "cluster_optimal",
  ...
)

Arguments

network_list	a list with multiple networks; all the networks should be trans_network object created from trans_network class of microeco package.
undirected_method	default "cluster_fast_greedy"; the modularity algorithm for undirected network; see cal_module function of trans_network class for more algorithms.
directed_method	default 'cluster_optimal'; the modularity algorithm for directed network.
...	other parameters (except for method) passed to cal_module function of trans_network class.

Value

list, with module attribute in nodes of each network

Examples

data(soil_amp_network)
soil_amp_network <- cal_module(soil_amp_network)

meconetcomp documentation built on Nov. 18, 2023, 5:06 p.m.