edge_tax_comp: Taxonomic sum of linked nodes in edges across networks

In meconetcomp: Compare Microbial Networks of 'trans_network' Class of 'microeco' Package

Taxonomic sum of linked nodes in edges across networks

Description

Taxonomic sum of linked nodes in edges across networks.

Usage

edge_tax_comp(network_list, taxrank = "Phylum", label = "+", rel = TRUE)

Arguments

network_list	a list with multiple networks; all the networks should be trans_network object created from trans_network class of microeco package.
taxrank	default "Phylum"; Which taxonomic level is used for the sum of nodes in edges.
label	default "+"; "+" or "-" or c("+", "-"); the edge label used for the selection of edges for the sum.
rel	default TRUE; TRUE represents using ratio, the denominator is the number of selected edges; FALSE represents the absolute number of the sum of edges.

Value

data.frame

Examples

data(soil_amp_network)
test <- edge_tax_comp(soil_amp_network)
# test is a microtable object

meconetcomp documentation built on June 23, 2024, 9:06 a.m.