Man pages for medfate
Mediterranean Forest Simulation
| aspwb | Simulation in agricultural areas |
| biophysics | Physical and biophysical utility functions |
| carbon | Carbon-related functions |
| communication | Internal communication |
| defaultControl | Control parameters for simulation models |
| defaultManagementFunction | Default forest management actions |
| defaultSoilParams | Default soil parameters |
| droughtStress | Drought stress indicators |
| emptyforest | Creation of an empty forest |
| evaluation | Evaluation of simulations results |
| examplemeteo | Example daily meteorology data |
| exampleobs | Example observed data |
| extract | Extracts model outputs |
| fire_behaviour | Fire behaviour functions |
| fireHazard | Fire hazard |
| fire_severity | Fire severity functions |
| fordyn | Forest dynamics |
| forest | Description of a forest stand. |
| forest2aboveground | Input for simulation models (deprecated) |
| forest_mapWoodyTables | Map forest plot data |
| forest_simplification | Forest complexity reduction |
| fuel_properties | Fuel stratification and fuel characteristics |
| fuel_windAdjustmentFactor | Wind adjustment factor for Rothermel's model |
| growth | Forest growth |
| herb_values | Herbaceous description functions |
| hydraulics_conductancefunctions | Hydraulic confuctance functions |
| hydraulics_defoliation | Hydraulic-related defoliation |
| hydraulics_scalingconductance | Scaling from conductivity to conductance |
| hydraulics_supplyfunctions | Hydraulic supply functions |
| hydrology_infiltration | Soil infiltration |
| hydrology_interception | Rainfall interception |
| hydrology_soilEvaporation | Bare soil evaporation and herbaceous transpiration |
| hydrology_soilWaterBalance | Soil water balance |
| hydrology_verticalInputs | Water vertical inputs |
| light_advanced | Advanced radiation transfer functions |
| light_basic | Radiation extinction functions used in basic transpiration... |
| medfate-package | medfate: Mediterranean Forest Simulation |
| modelInput | Input for simulation models |
| modifyParams | Modify parameters |
| moisture | Tissue moisture functions |
| mortality_dailyProbability | Mortality |
| optimization | Multiple model runs and function factories for optimization... |
| pheno_updateLeaves | Leaf phenology |
| photo | Photosynthesis submodel functions |
| plant_values | Woody plant cohort description functions |
| plot.forest | Plot forest attributes |
| plot.spwb | Plots simulation results |
| plot.spwb_day | Plots simulation results for one day |
| poblet_trees | Example forest inventory data |
| regeneration | Plant regeneration |
| resetInputs | Reset simulation inputs |
| resistances | Soil-plant resistances |
| root | Root functions |
| SFM_metric | Standard fuel models (Albini 1976, Scott & Burgan 2005) |
| shinyplot | Shiny app with interactive plots |
| soil | Soil initialization |
| soil_redefineLayers | Redefine soil layer widths |
| soil_texture | Soil texture and hydraulics |
| soil_thermodynamics | Soil thermodynamic functions |
| species_values | Species description functions |
| SpParams | Data tables with species parameter definitions and values |
| spwb | Soil-plant water balance |
| spwb_day | Single-day simulation |
| stand_values | Stand values |
| summary.forest | Summary of forest structure |
| summary.spwb | Summarize simulation results |
| sureau_ecos | Sureau-ECOS inner functions for testing only |
| TaxonTraitMeans | Parameter average values |
| transp_maximumTranspirationModel | Maximum transpiration vs. LAI |
| transp_modes | Transpiration modes |
| transp_stomatalregulation | Stomatal regulation |
| tree2forest | Single-cohort forests |
| utils_ldrOptimization | Optimization of root distribution |
| utils_rockOptimization | Optimization of rock fragment content |
| vprofile_leafAreaDensity | Vertical profiles |
| waterUseEfficiency | Water use efficiency |
| wind | Models for canopy turbulence |
| woodformation | Wood formation |
