Nothing
library(medfate)
data(exampleforestMED)
data(SpParamsMED)
data(examplemeteo)
#Prepare a two-year meteorological data with half precipitation during
#the second year
meteo2001 <- examplemeteo
meteo2002 <- examplemeteo
meteo2002$Precipitation <- meteo2002$Precipitation/2
row.names(meteo2002) <- seq(as.Date("2002-01-01"),
as.Date("2002-12-31"), by="day")
meteo_01_02 <- rbind(meteo2001, meteo2002)
meteo_01_02_B <- meteo_01_02
meteo_01_02_B$dates <- as.Date(row.names(meteo_01_02_B))
row.names(meteo_01_02_B) <- NULL
#Load example plot plant data
data(exampleforestMED)
#Default species parameterization
data(SpParamsMED)
#Initialize control parameters
control <- defaultControl("Granier")
control$verbose <- FALSE
#Initialize soil with default soil params (4 layers)
examplesoil <- soil(defaultSoilParams(4))
test_that("fordyn can be run in example and empty forests",{
expect_s3_class(fordyn(exampleforestMED, examplesoil,
SpParamsMED, meteo_01_02, control,
latitude = 41.82592, elevation = 100), "fordyn")
expect_s3_class(fordyn(emptyforest(), examplesoil,
SpParamsMED, meteo_01_02, control,
latitude = 41.82592, elevation = 100), "fordyn")
})
test_that("fordyn can be run using species codes",{
f <- exampleforestMED
f$treeData$Species <- c(148, 168)
f$shrubData$Species <- 165
expect_s3_class(fordyn(f, examplesoil,
SpParamsMED, meteo_01_02, control,
latitude = 41.82592, elevation = 100), "fordyn")
})
test_that("fordyn can be run in example and empty forests using management",{
expect_s3_class(fordyn(exampleforestMED, examplesoil,
SpParamsMED, meteo_01_02, control,
latitude = 41.82592, elevation = 100,
management_function = defaultManagementFunction,
management_args = defaultManagementArguments()), "fordyn")
expect_s3_class(fordyn(emptyforest(), examplesoil,
SpParamsMED, meteo_01_02, control,
latitude = 41.82592, elevation = 100,
management_function = defaultManagementFunction,
management_args = defaultManagementArguments()), "fordyn")
})
test_that("fordyn can be run using dates as columns",{
expect_s3_class(fordyn(exampleforestMED, examplesoil,
SpParamsMED, meteo_01_02_B, control,
latitude = 41.82592, elevation = 100), "fordyn")
})
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