Nothing
#' @rdname print
setMethod("print", "EL", function(x,
digits = max(3L, getOption("digits") - 3L),
...) {
if (is.null(weights(x))) {
cat("\n\tEmpirical Likelihood\n")
} else {
cat("\n\tWeighted Empirical Likelihood\n")
}
cat("\nModel:", getMethodEL(x), "\n\nMaximum EL estimates:\n")
print.default(coef(x), digits = digits, ...)
cat("\n")
out <- c(
paste("Chisq:", format.default(chisq(x), digits = digits, ...)),
paste("df:", getDF(x)),
paste("Pr(>Chisq):", format.pval(pVal(x), digits = digits, ...))
)
cat(strwrap(paste(out, collapse = ", ")), sep = "\n\n")
cat(show_convergence(x), "\n\n")
invisible(x)
})
setMethod("show", "EL", function(object) print(object))
#' @rdname print
setMethod("print", "ELMT", function(x,
digits = max(3L, getOption("digits") - 3L),
...) {
method <- switch(x@calibrate,
"mvchisq" = "Multivariate chi-square"
)
cat("\n\tEmpirical Likelihood Multiple Tests\n\n")
cat("Overall significance level:", x@alpha, "\n\n")
cat("Calibration:", method, "\n\n")
cat("Hypotheses:\n")
est <- getEstimates(x)
if (isTRUE(all(vapply(est, FUN = length, FUN.VALUE = integer(1L)) == 1L))) {
out <- cbind(Estimate = unlist(est), Chisq = chisq(x), Df = getDF(x))
rownames(out) <- describe_hypothesis(x@rhs, x@lhs, colnames(x@lhs), digits)
ind <- 2L
} else {
out <- cbind(Chisq = chisq(x), Df = getDF(x))
rownames(out) <- seq_along(pVal(x))
ind <- 1L
}
printCoefmat(out, digits = digits, tst.ind = ind)
cat("\n")
invisible(x)
})
setMethod("show", "ELMT", function(object) print(object))
#' @rdname print
setMethod("print", "ELT", function(x,
digits = max(3L, getOption("digits") - 3L),
...) {
cat("\n\tEmpirical Likelihood Test\n\n")
cat("Hypothesis:", describe_hypothesis(
x@rhs, x@lhs, names(getOptim(x)$par)[seq_len(ncol(x@lhs))], digits
), sep = "\n")
method <- switch(x@calibrate,
"chisq" = "Chi-square",
"boot" = "Bootstrap",
"f" = "F"
)
cat(paste0(
"\nSignificance level: ", format.default(x@alpha, digits = digits, ...),
", Calibration: ", method
), "\n")
cat(
paste0(
"\nStatistic: ", format.default(chisq(x), digits = digits, ...),
", Critical value: ", format.default(critVal(x), digits = digits, ...),
"\np-value: ", format.pval(pVal(x), digits = digits)
), "\n"
)
cat(show_convergence(x), "\n\n")
invisible(x)
})
setMethod("show", "ELT", function(object) print(object))
#' @rdname print
setMethod("print", "LM", function(x,
digits = max(3L, getOption("digits") - 3L),
...) {
if (is.null(weights(x))) {
cat("\n\tEmpirical Likelihood\n\n")
} else {
cat("\n\tWeighted Empirical Likelihood\n\n")
}
method <- getMethodEL(x)
if (isFALSE(is.na(method))) {
if (is(x, "GLM")) {
model <- unlist(strsplit(method, split = "_", fixed = TRUE))
cat("Model: glm (", model[1L], " family with ", model[2L], " link)",
"\n\n",
sep = ""
)
} else {
cat("Model: lm", "\n\n")
}
}
if (length(coef(x)) != 0L) {
cat("Maximum EL estimates:\n")
print.default(coef(x), digits = digits, ...)
cat("\n")
}
if (length(chisq(x)) != 0L) {
out <- c(
paste("Chisq:", format.default(chisq(x), digits = digits, ...)),
paste("df:", getDF(x)),
paste("Pr(>Chisq):", format.pval(pVal(x), digits = digits, ...))
)
} else {
out <- c("Empty model")
}
cat(strwrap(paste(out, collapse = ", ")), sep = "\n\n")
if (length(chisq(x)) != 0L) {
cat(show_convergence(x), "\n")
}
cat("\n")
invisible(x)
})
setMethod("show", "LM", function(object) print(object))
#' @rdname print
setMethod(
"print", "SummaryEL",
function(x, digits = max(3L, getOption("digits") - 3L), ...) {
if (x@weighted) {
cat("\n\tWeighted Empirical Likelihood\n")
} else {
cat("\n\tEmpirical Likelihood\n")
}
cat(
"\nModel:", getMethodEL(x),
"\n\nNumber of observations:", nobs(x),
"\nNumber of parameters:", getNumPar(x),
"\n\nParameter values under the null hypothesis:\n"
)
print.default(getOptim(x)$par, digits = digits, ...)
cat("\nLagrange multipliers:\n")
print.default(getOptim(x)$lambda, digits = digits, ...)
cat("\nMaximum EL estimates:\n")
print.default(coef(x), digits = digits, ...)
cat(
paste0(
"\nlogL: ", format.default(logL(x), digits = digits, ...),
", logLR: ", format.default(logLR(x), digits = digits, ...)
), "\n"
)
out <- c(
paste("Chisq:", format.default(chisq(x), digits = digits), ...),
paste("df:", getDF(x)),
paste("Pr(>Chisq):", format.pval(pVal(x), digits = digits), ...)
)
cat(strwrap(paste(out, collapse = ", ")), sep = "\n\n")
cat(show_convergence(x), "\n\n")
invisible(x)
}
)
setMethod("show", "SummaryEL", function(object) print(object))
#' @rdname print
setMethod(
"print", "SummaryELMT",
function(x,
digits = max(3L, getOption("digits") - 3L),
signif.stars = getOption("show.signif.stars"),
...) {
method <- switch(x@calibrate,
"mvchisq" = "Multivariate chi-square"
)
cat("\n\tEmpirical Likelihood Multiple Tests\n\n")
cat("Overall significance level:", x@alpha, "\n\n")
cat("Calibration:", method, "\n\n")
cat("Hypotheses:\n")
est <- getEstimates(x)
if (isTRUE(all(vapply(est, FUN = length, FUN.VALUE = integer(1L)) == 1L))) {
out <- cbind(
Estimate = unlist(est), Chisq = chisq(x), Df = getDF(x), p.adj = pVal(x)
)
rownames(out) <- describe_hypothesis(
x@rhs, x@lhs, colnames(x@lhs), digits
)
ind <- 2L
} else {
out <- cbind(Chisq = chisq(x), Df = getDF(x), p.adj = pVal(x))
rownames(out) <- seq_along(pVal(x))
ind <- 1L
}
printCoefmat(out,
digits = digits, signif.stars = signif.stars, tst.ind = ind,
P.values = TRUE, has.Pvalue = TRUE, eps.Pvalue = 1e-03
)
cat("\n")
cat(paste(
"Common critical value:", format.default(critVal(x), digits = digits, ...)
), "\n\n")
invisible(x)
}
)
setMethod("show", "SummaryELMT", function(object) print(object))
#' @rdname print
setMethod(
"print", "SummaryELT",
function(x, digits = max(3L, getOption("digits") - 3L), ...) {
cat("\n\tEmpirical Likelihood Test\n\n")
cat("Hypothesis:", describe_hypothesis(
x@rhs, x@lhs, names(getOptim(x)$par)[seq_len(ncol(x@lhs))], digits
), sep = "\n")
method <- switch(x@calibrate,
"chisq" = "Chi-square",
"boot" = "Bootstrap",
"f" = "F"
)
cat(paste0(
"\nSignificance level: ", format.default(x@alpha, digits = digits, ...),
", Calibration: ", method
), "\n")
cat("\nParameter values under the null hypothesis:\n")
print.default(getOptim(x)$par, digits = digits, ...)
cat("\nLagrange multipliers:\n")
print.default(getOptim(x)$lambda, digits = digits, ...)
cat(
paste0(
"\nlogL: ", format.default(logL(x), digits = digits, ...),
", logLR: ", format.default(logLR(x), digits = digits, ...),
"\nStatistic: ", format.default(chisq(x), digits = digits, ...),
", Critical value: ", format.default(critVal(x), digits = digits, ...),
"\np-value: ", format.pval(pVal(x), digits = digits)
), "\n"
)
cat(show_convergence(x), "\n\n")
invisible(x)
}
)
setMethod("show", "SummaryELT", function(object) print(object))
#' @rdname print
setMethod(
"print", "SummaryGLM", function(x,
digits = max(3L, getOption("digits") - 3L),
signif.stars = getOption("show.signif.stars"),
...) {
if (x@weighted) {
cat("\n\tWeighted Empirical Likelihood\n")
} else {
cat("\n\tEmpirical Likelihood\n")
}
cat("\nModel: glm (", x@family$family, " family with ", x@family$link,
" link)", "\n",
sep = ""
)
cat("\nCall:\n", paste(deparse(x@call, ...), sep = "\n", collapse = "\n"),
"\n",
sep = ""
)
if (length(chisq(x)) != 0L) {
cat(
"\nNumber of observations:", nobs(x),
"\nNumber of parameters:", getNumPar(x), "\n"
)
cat("\nParameter values under the null hypothesis:\n")
print.default(getOptim(x)$par, digits = digits, ...)
cat("\nLagrange multipliers:\n")
print.default(getOptim(x)$lambda, digits = digits, ...)
cat("\nMaximum EL estimates:\n")
print.default(coef(x)[,1L], digits = digits, ...)
cat(paste(
"\nlogL:", format.default(logL(x), digits = digits, ...),
", logLR:", format.default(logLR(x), digits = digits, ...)
), "\n")
out <- c(
paste("Chisq:", format(chisq(x), digits = digits)),
paste("df:", getDF(x)),
paste("Pr(>Chisq):", format.pval(pVal(x), digits = digits))
)
cat(strwrap(paste(out, collapse = ", ")), sep = "\n\n")
cat(show_convergence(x), "\n")
} else {
cat("\nEmpty model\n")
}
aliased <- x@aliased
if (length(aliased) == 0L) {
cat("\nNo Coefficients\n")
} else {
cat("\nCoefficients:\n")
coefs <- coef(x)
if (any(aliased)) {
cn <- names(aliased)
coefs <-
matrix(NA, length(aliased), 3L, dimnames = list(cn, colnames(coefs)))
coefs[!aliased, ] <- coef(x)
}
printCoefmat(coefs,
digits = digits, signif.stars = signif.stars,
P.values = TRUE, has.Pvalue = TRUE, na.print = "NA", ...
)
cat("\nDispersion for ", x@family$family, " family: ",
format(x@dispersion), "\n",
sep = ""
)
}
mess <- naprint(x@na.action)
if (isTRUE(nzchar(mess))) {
cat(" (", mess, ")\n", sep = "")
}
cat("\n")
invisible(x)
}
)
setMethod("show", "SummaryGLM", function(object) print(object))
#' @rdname print
setMethod(
"print", "SummaryLM", function(x,
digits = max(3L, getOption("digits") - 3L),
signif.stars = getOption("show.signif.stars"),
...) {
if (x@weighted) {
cat("\n\tWeighted Empirical Likelihood\n")
} else {
cat("\n\tEmpirical Likelihood\n")
}
cat("\nModel:", getMethodEL(x), "\n")
cat("\nCall:\n", paste(deparse(x@call, ...), sep = "\n", collapse = "\n"),
"\n",
sep = ""
)
if (length(chisq(x)) != 0L) {
cat(
"\nNumber of observations:", nobs(x),
"\nNumber of parameters:", getNumPar(x), "\n"
)
cat("\nParameter values under the null hypothesis:\n")
print.default(getOptim(x)$par, digits = digits, ...)
cat("\nLagrange multipliers:\n")
print.default(getOptim(x)$lambda, digits = digits, ...)
cat("\nMaximum EL estimates:\n")
print.default(coef(x)[,1L], digits = digits, ...)
cat(paste(
"\nlogL:", format.default(logL(x), digits = digits, ...),
", logLR:", format.default(logLR(x), digits = digits, ...)
), "\n")
out <- c(
paste("Chisq:", format(chisq(x), digits = digits)),
paste("df:", getDF(x)),
paste("Pr(>Chisq):", format.pval(pVal(x), digits = digits))
)
cat(strwrap(paste(out, collapse = ", ")), sep = "\n\n")
cat(show_convergence(x), "\n")
} else {
cat("\nEmpty model\n")
}
aliased <- x@aliased
if (length(aliased) == 0L) {
cat("\nNo Coefficients\n")
} else {
cat("\nCoefficients:\n")
coefs <- coef(x)
if (any(aliased)) {
cn <- names(aliased)
coefs <-
matrix(NA, length(aliased), 3L, dimnames = list(cn, colnames(coefs)))
coefs[!aliased, ] <- coef(x)
}
printCoefmat(coefs,
digits = digits, signif.stars = signif.stars,
P.values = TRUE, has.Pvalue = TRUE, na.print = "NA", ...
)
}
mess <- naprint(x@na.action)
if (isTRUE(nzchar(mess))) {
cat(" (", mess, ")\n", sep = "")
}
cat("\n")
invisible(x)
}
)
setMethod("show", "SummaryLM", function(object) print(object))
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