metaGE: Meta-Analysis for Detecting Genotype x Environment Associations

Meta-analysis of genome-wide association studies for studying Genotype x Environment interactions. The 4 main functions of the package metaGE.collect(), metaGE.cor(), metaGE.fit() and metaGE.test() correspond to 4 steps to perform the meta-analysis: Collecting the results of genome-wide association studies data from different files; Inferring the inter-environment correlation matrix; Performing global test procedure for quantitative trait loci detection (using a Fixed or Random effect model); Performing tests of contrast or meta-regression using an environmental co-factor. (De Walsche, A., et al. (2023) <doi:10.1101/2023.03.01.530237>).

Package details

AuthorAnnaïg De Walsche [aut, cre] (<https://orcid.org/0000-0003-0603-1716>), Tristan Mary-Huard [aut] (<https://orcid.org/0000-0002-3839-9067>)
MaintainerAnnaïg De Walsche <annaig.de-walsche@inrae.fr>
LicenseGPL-3
Version1.0.3
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("metaGE")

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metaGE documentation built on Sept. 28, 2023, 9:07 a.m.