metaGE.pvalplot: Display visual checks of pvalues.
In metaGE: Meta-Analysis for Detecting Genotype x Environment Associations

metaGE.pvalplot

R Documentation

Display visual checks of pvalues.

Description

The function metaGE.pvalplot displays the pvalue distribution and the QQplot of the -log10(pvalues).

Usage

metaGE.pvalplot(Pvalues, Main = "")

Arguments

`Pvalues`	A vector containing pvalues.
`Main`	The main to display.(optional)

Value

No return value, the plot is displayed in the active graphics window.

Examples

# Import the data
data("metaData")

# Compute the inter-environment correlation matrix
matCorr <- metaGE.cor(metaData, Threshold = 0.8)

# Fit the Fixed Effect model
FeDF <- metaGE.fit(metaData, matCorr, Method = "Fe")

# Check the pvalues
metaGE.pvalplot(Pvalues = FeDF$PVALUE, Main= "Pvalue Fe")

metaGE documentation built on April 3, 2025, 8:48 p.m.