Man pages for metaGE
Meta-Analysis for Detecting Genotype x Environment Associations
| autocor | Computation of the autocorrelation |
| CheckContrast | Check and reformat the matrix of contrast |
| CheckIncidence | Check and reformat the matrix of incidence |
| ContrastStatTest | Compute the statistic of the contrast test. |
| ContrastStatTest.NA | Compute the statistic of the contrast test in presence of... |
| envDesc | Description of the environments. |
| FastKerFdr | FastKerFdr |
| GetH0Items | GetH0Items |
| lindley | Computation of the lindley process from scores. |
| LLikelihoodT_vect | LLikelihoodT_vect |
| MakeQQplot | Drawing a QQplot |
| metaData | Results of different GWAS. |
| metaGE.collect | Collect the results of GWAS data from different files |
| metaGE.cor | Infer inter-environment correlation matrix |
| metaGE.fit | Meta-analysis procedure: Fixed or Random effect. |
| metaGE.heatmap | Draw the heatmap to see markers effects across environments. |
| metaGE.incidence | Create the matrix of incidence. |
| metaGE.lscore | Compute the local score from a set of pvalues. |
| metaGE.manhattan | Draw the Manhattan plot. |
| metaGE-package | metaGE: Meta-Analysis for Detecting Genotype x Environment... |
| metaGE.pvalplot | Display visual checks of pvalues. |
| metaGE.regplot | Plot the z-score of a marker according to a covariate. |
| metaGE.test | Meta-analysis test for Genotype x Environment interactions:... |
| ReadData | ReadData |
| RegressionStatTest | Compute the pvalue of the meta-regression test. |
| RegressionStatTestNA | Compute the pvalue of the regression test in presence of... |
| sig_sl | Computation of the significative regions |
| thresUnif | Computation of the significance threshold |
