combineGrowthLimFuncDefault: combines the growth limitation functions and max growth rates...

In microPop: Process-Based Modelling of Microbial Populations

Description

Returns the specific growth rate in units of inverse time

Usage

combineGrowthLimFuncDefault(
  strainName,
  groupName,
  pathName,
  subst,
  ess,
  boost,
  bio.sub,
  maxGrowthRate,
  growthLim,
  keyResName,
  nonBoostFrac
)

Arguments

strainName	Name of the strain that is being looped through in the ODE solver
groupName	Name of microbial group that is being looped through in the ODE solver
pathName	Name of metabolic path (e.g. path1) that is being looped through in the ODE solver
subst	Vector of strings giving the names of the substitutable resources for given strain, pathway
ess	Vector of strings giving the names of the essential resources for given strain, pathway
boost	Vector of strings giving the names of the boosting resources for given strain, pathway
bio.sub	Vector of strings giving the names of the microbial resources for given strain, pathway
maxGrowthRate	Vector containing maximum growth rate on each resource (named by resourceNames). If a resource is not on the pathway the value is NA
growthLim	Vector containing the growth limitation from each resource (named by resourceNames). If a resource is not on the pathway the value is NA
keyResName	String giving the name of the key resource on this pathway
nonBoostFrac	(scalar) Fraction of max growth achievable if boosting resource is not present but is required on this pathway

Value

(scalar) specific growth rate in units of inverse time

microPop documentation built on Feb. 3, 2022, 5:07 p.m.