makeParamMatrixS: Gets parameter values for parameters halfSat, yield and...

In microPop: Process-Based Modelling of Microbial Populations

Description

Gets parameter values for parameters halfSat, yield and maxGrowthRate from the MFGs and puts into a matrix also assigns strain traits since traits are assigned to all strains at once for one param they are stored in Mat[strain,res,path], this is then rearranged to make a matrix for each strain (mat[path,res]).

Usage

makeParamMatrixS(
  resNames,
  microbeNames,
  parameterName,
  numPaths,
  numStrains,
  strainOptions,
  oneStrainRandomParams
)

Arguments

resNames	Vector of strings which contains the names of the resources in the system
microbeNames	Vector of strings which contains the names of the microbial groups in the system e.g. c('Bacteroides','Acetogens')
parameterName	Name of parameter
numPaths	Named vector. Number of paths for each microbial group
numStrains	Integer or named vector of integers. Number of strains per group
strainOptions	List of strain options
oneStrainRandomParams	Logical. TRUE for randomized params even if there is only one strain.

Value

A list called parameterName which contains matrices for all strains (in all groups) with paths on rows and resources on columns

microPop documentation built on Feb. 3, 2022, 5:07 p.m.