getValues: get system quantity (e.g. startValue, inflowRate, washOut)...

In microPop: Process-Based Modelling of Microbial Populations

Description

get system quantity (e.g. startValue, inflowRate, washOut) for all state variables (convention is that microbes are before resources)

Usage

getValues(
  sysInfoMicrobes,
  sysInfoRes,
  stateVarNames,
  quantity,
  strainNames,
  microbeNames,
  resourceNames,
  numStrains
)

Arguments

sysInfoMicrobes	sys info dataframe for microbes
sysInfoRes	sys info dataframe for resources
stateVarNames	Vector of names of all the state variables
quantity	String. Name of quantity to get value for e.g. 'startValue'
strainNames	Vector of strings of strain names
microbeNames	Vector of strings which contains the names of the microbial groups in the system e.g. c('Bacteroides','Acetogens')
resourceNames	Vector of strings which contains the names of the resources in the system
numStrains	Integer. Number of strains per group

microPop documentation built on Feb. 3, 2022, 5:07 p.m.