networkDFfromMPoutput: networkDFfromMPoutput

In microPop: Process-Based Modelling of Microbial Populations

Description

make node and edge data frames from microPop output to use in visNetwork

Usage

networkDFfromMPoutput(
  chosen.time,
  MPoutput,
  groupNames = NULL,
  sumOverPaths = TRUE,
  sumOverStrains = TRUE,
  convertToMoles = TRUE
)

Arguments

chosen.time	the time you want to plot
MPoutput	the output from microPopModel()
groupNames	Default is NULL which plots all the microbes. To plot a subset of all the groups, specify a vector of strings of the names of the groups you want to plot.
sumOverPaths	Logical. Default is TRUE which sums flows between the same nodes even if they are on different metabolic paths
sumOverStrains	Logical. Default is TRUE which means the strains are put into their functional group nodes and the flow are summed. When it is FALSE, each strain will have its own node.
convertToMoles	Logical. Default is TRUE

Value

a list containing the edges and nodes

microPop documentation built on Feb. 3, 2022, 5:07 p.m.