Files in microPop
Process-Based Modelling of Microbial Populations
MD5
NAMESPACE
DESCRIPTION
LICENSE
R/getNumPaths.R
R/getNonBoostFrac.R
R/entryRateFuncDefault.R
R/plotResources.R
R/sumFlowOverStrains.R
R/convertStatesToMoles.R
R/checkSolution.R
R/makeInflowFromSoln.R
R/getStrainParamsFromFile.R
R/getPHcorners.R
R/getGroupName.R
R/checkStoichiom.R
R/pHLimFuncDefault.R
R/networkDFfromMPinput.R
R/quickPlot.R
R/networkDFfromMPoutput.R
R/extraGrowthLimFuncDefault.R
R/growthLimFuncDefault.R
R/data.R
R/makeParamMatrixG.R
R/getVNPlotObject.R
R/getMolarYields.R
R/combineGrowthLimFuncDefault.R
R/rateFuncsDefault.R
R/plotMicrobes.R
R/makeParamMatrixS.R
R/plotTraitChange.R
R/getValues.R
R/runMicroPopExample.R
R/combinePathsFuncDefault.R
R/convertFlowsToMoles.R
R/sumFlowsOverPaths.R
R/quickPlot2.R
R/removalRateFuncDefault.R
R/pHcentreOfMass.R
R/pHFuncDefault.R
R/assignNAsToMFGs.R
R/subsetFunc.R
R/assignStrainTraits.R
R/reshapeFlowMat.R
R/makeNetworkMatrices.R
R/replaceListItems.R
R/quickPlot1.R
R/getKeyRes.R
R/getStrainPHcorners.R
R/applyTraitTradeOffs.R
R/meanTraitFunc.R
R/getMolarStoichiom.R
R/waterUptakeRatio.R
R/getAllResources.R
R/productionFuncDefault.R
R/createDF.R
R/checkResInfo.R
R/massBalanceFuncDefault.R
R/uptakeFuncDefault.R
R/microPopModel.R
R/derivsDefault.R
R/sumConcOverStrains.R
R/microPop-package.R
inst/doc/plottingNetworks.R
inst/doc/plottingNetworks.html
inst/doc/microPopTutorial.html
inst/doc/plottingNetworks.Rmd
inst/doc/microPopTutorial.R
inst/doc/microPopTutorial.Rmd
inst/testdata/MFG1.csv
inst/extdata/ButyrateProducers2.csv
inst/extdata/NoButyFibreDeg.csv
inst/extdata/NoButyStarchDeg.csv
inst/extdata/Xsu.csv
inst/extdata/microbeSysInfoHuman.csv
inst/extdata/PropionateProducers.csv
inst/extdata/ButyrateProducers3.csv
inst/extdata/resourceSysInfoHuman.csv
inst/extdata/MFG.csv
inst/extdata/systemInfoResourcesPhyto.csv
inst/extdata/microbeSysInfo.csv
inst/extdata/Xaa.csv
inst/extdata/LactateProducers.csv
inst/extdata/strainParams.csv
inst/extdata/systemInfoMicrobesPhyto.csv
inst/extdata/resourceSysInfo.csv
inst/extdata/systemInfoResourcesVirus.csv
inst/extdata/ButyrateProducers1.csv
inst/extdata/systemInfoMicrobesVirus.csv
inst/extdata/Bacteroides.csv
inst/extdata/Xh2.csv
inst/extdata/Methanogens.csv
inst/extdata/microbeSysInfoRumen.csv
inst/extdata/resourceSysInfoRumen.csv
inst/extdata/Acetogens.csv
inst/DemoFiles/strains.R
inst/DemoFiles/phyto.R
inst/DemoFiles/human4.R
inst/DemoFiles/human3.R
inst/DemoFiles/phages.R
inst/DemoFiles/rumen.R
inst/DemoFiles/human2.R
inst/DemoFiles/human1.R
build/vignette.rds
tests/testthat.R
tests/testthat/testsForStrainFuncs.R
tests/testthat/testsWithNoModelRun.R
tests/testthat/loadTestDataFunc.R
tests/testthat/testsForModelRun1.R
tests/testthat/testsWithDemoFiles.R
tests/testthat/testsForModelRun0.R
tests/testthat/testsForNetworks.R
vignettes/microbeSI2.csv
vignettes/microbeSI.csv
vignettes/plottingNetworks.Rmd
vignettes/resourceSI2.csv
vignettes/MFG3.csv
vignettes/resourceSI.csv
vignettes/microPopTutorial.Rmd
vignettes/MFG2.csv
vignettes/MFG1.csv
data/PropionateProducers.RData
data/resourceSysInfo.RData
data/microbeSysInfoRumen.RData
data/Bacteroides.RData
data/Xh2.RData
data/Acetogens.RData
data/NoButyStarchDeg.RData
data/systemInfoMicrobesVirus.RData
data/ButyrateProducers1.RData
data/resourceSysInfoHuman.RData
data/systemInfoResourcesPhyto.RData
data/microbeSysInfoHuman.RData
data/microbeSysInfo.RData
data/Xsu.RData
data/ButyrateProducers2.RData
data/Xaa.RData
data/ButyrateProducers3.RData
data/resourceSysInfoRumen.RData
data/LactateProducers.RData
data/systemInfoResourcesVirus.RData
data/MFG.RData
data/NoButyFibreDeg.RData
data/systemInfoMicrobesPhyto.RData
data/strainParams.RData
data/Methanogens.RData
man/LactateProducers.Rd
man/assignStrainTraits.Rd
man/systemInfoResourcesVirus.Rd
man/NoButyFibreDeg.Rd
man/quickPlot1.Rd
man/growthLimFuncDefault.Rd
man/combineGrowthLimFuncDefault.Rd
man/makeInflowFromSoln.Rd
man/massBalanceFuncDefault.Rd
man/createDF.Rd
man/Methanogens.Rd
man/networkDFfromMPoutput.Rd
man/getStrainParamsFromFile.Rd
man/getPHcorners.Rd
man/runMicroPopExample.Rd
man/systemInfoMicrobesVirus.Rd
man/microbeSysInfo.Rd
man/strainParams.Rd
man/reshapeFlowMat.Rd
man/makeParamMatrixG.Rd
man/getValues.Rd
man/PropionateProducers.Rd
man/combinePathsFuncDefault.Rd
man/waterUptakeRatio.Rd
man/assignNAsToMFGs.Rd
man/checkStoichiom.Rd
man/plotResources.Rd
man/getNumPaths.Rd
man/uptakeFuncDefault.Rd
man/ButyrateProducers2.Rd
man/getNonBoostFrac.Rd
man/Acetogens.Rd
man/resourceSysInfo.Rd
man/pHcentreOfMass.Rd
man/checkSolution.Rd
man/quickPlot.Rd
man/getStrainPHcorners.Rd
man/Xh2.Rd
man/microPop-package.Rd
man/Xsu.Rd
man/getAllResources.Rd
man/applyTraitTradeOffs.Rd
man/getKeyRes.Rd
man/ButyrateProducers3.Rd
man/rateFuncsDefault.Rd
man/convertFlowsToMoles.Rd
man/microbeSysInfoHuman.Rd
man/MFG.Rd
man/convertStatesToMoles.Rd
man/makeNetworkMatrices.Rd
man/systemInfoMicrobesPhyto.Rd
man/sumFlowOverStrains.Rd
man/NoButyStarchDeg.Rd
man/plotMicrobes.Rd
man/resourceSysInfoRumen.Rd
man/replaceListItems.Rd
man/getGroupName.Rd
man/extraGrowthLimFuncDefault.Rd
man/ButyrateProducers1.Rd
man/derivsDefault.Rd
man/productionFuncDefault.Rd
man/Bacteroides.Rd
man/microPopModel.Rd
man/pHFuncDefault.Rd
man/systemInfoResourcesPhyto.Rd
man/subsetFunc.Rd
man/microbeSysInfoRumen.Rd
man/Xaa.Rd
man/getVNPlotObject.Rd
man/plotTraitChange.Rd
man/resourceSysInfoHuman.Rd
man/sumFlowsOverPaths.Rd
man/makeParamMatrixS.Rd
man/quickPlot2.Rd
man/meanTraitFunc.Rd
man/entryRateFuncDefault.Rd
man/pHLimFuncDefault.Rd
man/removalRateFuncDefault.Rd
man/networkDFfromMPinput.Rd
man/sumConcOverStrains.Rd
man/checkResInfo.Rd
