quickPlot2: Generic plotting showing results of microPop Now shows...

In microPop: Process-Based Modelling of Microbial Populations

Description

Generic plotting showing results of microPop Now shows resources and microbes on one plot.

Usage

quickPlot2(
  soln,
  numR,
  numStrains,
  microbeNames,
  yLabel = "Concentration (g/L)",
  xLabel = "Time",
  sumOverStrains = TRUE,
  resourceLegendPosition = "topleft",
  microbeLegendPosition = "topleft",
  saveFig = FALSE,
  figType = "eps",
  figName = "microPopFig",
  cex.plot = 1,
  cex.legend = 0.7
)

Arguments

soln	ODE output from microPopModel() i.e. matrix out$solution
numR	Scalar. Number of resources
numStrains	Scalar. Number of strains per group
microbeNames	Vector of strings which contains the names of the microbial groups in the system e.g. c('Bacteroides','Acetogens')
yLabel	String for y axis label. Default is "Concentration (g/L)"
xLabel	String for x axis label. Default is "Time"
sumOverStrains	Logical. Default=TRUE
resourceLegendPosition	String. Position of legend in resource plot, default is 'topleft'
microbeLegendPosition	String. Position of legend in microbe plot, default is 'topleft'
saveFig	Logical. Default is FALSE
figType	String. Default is "eps"
figName	String. Default is "microPopFig"
cex.plot	Multiplier for text size on axes text. Default is 1
cex.legend	Multiplier for text size in legend. Default is 0.7

Value

Nothing just generates a plot

microPop documentation built on Feb. 3, 2022, 5:07 p.m.