inst/DemoFiles/strains.R

rm(list=ls())
graphics.off()

detach(package:microPop)
library(microPop)


out=microPopModel(
    microbeNames=c('Bacteroides','ButyrateProducers1'),
    times=seq(0,10,0.1),
    resourceSysInfo=resourceSysInfoHuman,
    microbeSysInfo=microbeSysInfoHuman,
    numStrains=c(Bacteroides=2,ButyrateProducers1=4),
    strainOptions=list(randomParams=c('maxGrowthRate','halfSat'),percentTraitRange=10),
    plotOptions=list(sumOverStrains=TRUE,plotFig=TRUE),
    pHLimit=TRUE,
    pHVal=5.7
)

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microPop documentation built on Feb. 3, 2022, 5:07 p.m.