R/data.R

In microbial: Do 16s Data Analysis and Generate Figures

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#' The physeq data was modified from the (Data) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2011)
#'
#' Published in PNAS in early 2011. This work compared the microbial
#' communities from 25 environmental samples and three known ``mock communities''
#' -- a total of 9 sample types -- at a depth averaging 3.1 million reads per sample.
#' Authors were able to reproduce diversity patterns seen in many other
#' published studies, while also invesitigating technical issues/bias by
#' applying the same techniques to simulated microbial communities of known
#'
#' @references
#' Caporaso, J. G., et al. (2011).
#' Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.
#' PNAS, 108, 4516-4522.
#' PMCID: PMC3063599
#'
#' @name data-physeq
#' @aliases physeq
#' @docType data
#' @keywords data
#' @examples
#' data(Physeq)
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