API for microeco
Microbial Community Ecology Data Analysis
| Global functions | |
|---|---|
| .corlm_test | Source code |
| Tax4Fun2_KEGG | Man page |
| aes_meco | Source code |
| calc_qvalues | Source code |
| calc_twosample_ts | Source code |
| calculate_metastat | Source code |
| check_microtable | Source code |
| check_table_variable | Source code |
| check_tax_level | Source code |
| check_taxa_abund | Source code |
| clone | Man page Source code |
| convert_diff2transenv | Source code |
| dataset | Man page |
| detect_differentially_abundant_features | Source code |
| dropallfactors | Man page Source code |
| env_data_16S | Man page |
| expand_colors | Source code |
| filter_lowabund_feature | Source code |
| fungi_func_FUNGuild | Man page |
| fungi_func_FungalTraits | Man page |
| generate_p_siglabel | Source code |
| ggplot_xtext_anglesize | Source code |
| load_frequency_matrix | Source code |
| microeco | Man page |
| microtable | Man page |
| otu_table_16S | Man page |
| otu_table_ITS | Man page |
| permute_and_calc_ts | Source code |
| permuted_pvalues | Source code |
| phylo_tree_16S | Man page |
| prok_func_FAPROTAX | Man page |
| prok_func_NJC19_list | Man page |
| recreate_microtable | Source code |
| sample_info_16S | Man page |
| sample_info_ITS | Man page |
| stat_corlm | Source code |
| summarySE_inter | Source code |
| taxonomy_table_16S | Man page |
| taxonomy_table_ITS | Man page |
| tidy_taxonomy | Man page Source code |
| tidy_taxonomy_column | Source code |
| trans_abund | Man page |
| trans_alpha | Man page |
| trans_beta | Man page |
| trans_classifier | Man page |
| trans_diff | Man page |
| trans_env | Man page |
| trans_func | Man page |
| trans_network | Man page |
| trans_norm | Man page |
| trans_nullmodel | Man page |
| trans_venn | Man page |
| trycharnum | Source code |
