dataset: The dataset structured with microtable class for the...
In microeco: Microbial Community Ecology Data Analysis
dataset R Documentation
The dataset structured with microtable class for the demonstration of examples
Description
The dataset arose from 16S rRNA gene amplicon sequencing of wetland soils in China <doi:10.1016/j.geoderma.2018.09.035>.
In dataset$sample_table, the 'Group' column means Chinese inland wetlands (IW), coastal wetland (CW) and Tibet plateau wetlands (TW).
The column 'Type' denotes the sampling region: northeastern region (NE), northwest region (NW), North China area (NC),
middle-lower reaches of the Yangtze River (YML), southern coastal area (SC), upper reaches of the Yangtze River (YU) and Qinghai-Tibet Plateau (QTP).
The column 'Saline' represents the saline soils and non-saline soils.
Usage
data(dataset)
Format
An R6 class object
Details
sample_table: sample information table
otu_table: species-community abundance table
tax_table: taxonomic table
phylo_tree: phylogenetic tree
taxa_abund: taxa abundance list with several tables for Phylum...Genus
alpha_diversity: alpha diversity table
beta_diversity: list with several beta diversity distance matrix
microeco documentation built on Nov. 18, 2023, 9:06 a.m.
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| dataset | R Documentation |
The dataset structured with microtable class for the demonstration of examples
Description
The dataset arose from 16S rRNA gene amplicon sequencing of wetland soils in China <doi:10.1016/j.geoderma.2018.09.035>.
In dataset$sample_table, the 'Group' column means Chinese inland wetlands (IW), coastal wetland (CW) and Tibet plateau wetlands (TW).
The column 'Type' denotes the sampling region: northeastern region (NE), northwest region (NW), North China area (NC),
middle-lower reaches of the Yangtze River (YML), southern coastal area (SC), upper reaches of the Yangtze River (YU) and Qinghai-Tibet Plateau (QTP).
The column 'Saline' represents the saline soils and non-saline soils.
Usage
data(dataset)
Format
An R6 class object
Details
sample_table: sample information table
otu_table: species-community abundance table
tax_table: taxonomic table
phylo_tree: phylogenetic tree
taxa_abund: taxa abundance list with several tables for Phylum...Genus
alpha_diversity: alpha diversity table
beta_diversity: list with several beta diversity distance matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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