TSdata: Time Series Example Dataset In micromapST: Linked Micromap Plots for General U. S. and Other Geographic Areas

Description

Data for Time Series Examples

The data are age-adjusted (2000 U.S. standard) female lung cancer mortality rates (per 100,000 population) for each year from 1996 to 2010.

Usage

 `1` ```TSdata ```

Format

This dataset is an array with dimensions of 51, 15, 4. The rownames of the array are the 51 state and DC abbreviations (2 characters). TSdata[,,1:4] contains the x (time) value, followed by the value for the line, then the lower 95% confidence limit, and finally the upper 95% confidence limit value.

Details

The first dimension [st,,] of 51 elements contains each state or DC. This dimension is referenced by the rownames of the array.

The second dimension [,t,] of n elements in this case are the time periods in the time series. Our example uses the years 1996 to 2010 as the time period values. A reasonable number of points is between 200 and 300.

The third dimension [,,v] of 2 or 4 elements is the x or y values during the time period. If the no confidence data is provided, the third dimension is 2:

• data[,,1] is the X value

• data[,,2] is the mid-Y value (Y)

If a confidence band is being plotted in \var{tsconf} graphs then there are 4 elements.

• data[,,1] is the X value

• data[,,2] is the mid-Y value (Y)

• data[,,3] is the low-Y value

• data[..4] is the high-Y value

For example, the x,y coordinates for year=1996 (time period = 1) for the first state (AK) is TSdata[1,1,c(1,2)].

This approach was done to allow a data matrix built for the "tsconf" glyphics to be used for a ts glyphics.

This data is used by micromapSEER with the "USStatesDF" border group.

 ``` 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19``` ``` # how to create a new time series data set tempTS <-read.table("...yourfilename.csv",sep=",",header=T) yrmat <-matrix(rep(1996:2010,51),nrow=51,ncol=15,byrow=T) # year labels ratemat<-as.matrix( tempTS[,c(8,13,18,23,28,33,38,43,48,53,58,63,68,73,78)] ) locimat<-as.matrix( tempTS[,c(9,14,19,24,29,34,39,44,49,54,59,64,69,74,79)] ) hicimat<-as.matrix( tempTS[,c(10,15,20,25,30,35,40,45,50,55,60,65,70,75,80)] ) workmat<-cbind(yrmat,ratemat,locimat,hicimat) TSdata <-NULL TSdata <-array(workmat,dim=c(51,15,4)) # change state ab from factors to characters. rownames(TSdata)<-as.character(tempTS\$stab) ```

Source

Surveillance, Epidemiology, and End Results (SEER) Program (www.seer.cancer.gov) SEER*Stat Database: Mortality - All COD, Aggregated With State, Total U.S. (1969-2010) (Katrina/Rita Population Adjustment), National Cancer Institute, DCCPS, Surveillance Research Program, Surveillance Systems Branch, released April 2013. Underlying mortality data provided by NCHS (www.cdc.gov/nchs).

micromapST documentation built on May 29, 2017, 8:39 p.m.