gdb.install_gtf_converter: Pre-install UCSC's gtfToGenePred binary
In misha: Toolkit for Analysis of Genomic Data
gdb.install_gtf_converter R Documentation
Pre-install UCSC's gtfToGenePred binary
Description
Mirrors gdb.install_gff3_converter. Required for the
ucsc-hub backend's genes set (UCSC mammal hubs ship GTFs).
Usage
gdb.install_gtf_converter(force = FALSE)
Arguments
force
If TRUE, skip consent prompt and re-download even if cached.
Details
Override the binary location by setting environment variable
MISHA_GTF_TO_GENEPRED.
Value
The cache path (invisibly).
Examples
## Not run:
gdb.install_gtf_converter()
Sys.setenv(MISHA_GTF_TO_GENEPRED = "/path/to/your/gtfToGenePred")
## End(Not run)
misha documentation built on Aug. 24, 2026, 5:14 p.m.
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| gdb.install_gtf_converter | R Documentation |
Pre-install UCSC's gtfToGenePred binary
Description
Mirrors gdb.install_gff3_converter. Required for the
ucsc-hub backend's genes set (UCSC mammal hubs ship GTFs).
Usage
gdb.install_gtf_converter(force = FALSE)
Arguments
force |
If |
Details
Override the binary location by setting environment variable
MISHA_GTF_TO_GENEPRED.
Value
The cache path (invisibly).
Examples
## Not run:
gdb.install_gtf_converter()
Sys.setenv(MISHA_GTF_TO_GENEPRED = "/path/to/your/gtfToGenePred")
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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