gdb.list_genomes: List resolvable genome names
In misha: Toolkit for Analysis of Genomic Data
gdb.list_genomes R Documentation
List resolvable genome names
Description
Returns a data frame describing every genome resolvable from the active
registry chain (see gdb.build_genome for the chain order).
Usage
gdb.list_genomes(registry = NULL)
Arguments
registry
Optional path to an explicit registry YAML, overriding the
resolution chain.
Value
A data frame with columns:
-
name - registry key.
-
source - backend (ucsc, ncbi, s3,
local, manual).
-
detail - assembly / accession / path.
-
resolved_from - which registry the entry came from.
See Also
gdb.build_genome, gdb.genome_info.
Examples
gdb.list_genomes()
misha documentation built on Aug. 24, 2026, 5:14 p.m.
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| gdb.list_genomes | R Documentation |
List resolvable genome names
Description
Returns a data frame describing every genome resolvable from the active
registry chain (see gdb.build_genome for the chain order).
Usage
gdb.list_genomes(registry = NULL)
Arguments
registry |
Optional path to an explicit registry YAML, overriding the resolution chain. |
Value
A data frame with columns:
-
name- registry key. -
source- backend (ucsc,ncbi,s3,local,manual). -
detail- assembly / accession / path. -
resolved_from- which registry the entry came from.
See Also
gdb.build_genome, gdb.genome_info.
Examples
gdb.list_genomes()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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