mixtools: Tools for Analyzing Finite Mixture Models

A collection of R functions for analyzing finite mixture models. This package is based upon work supported by the National Science Foundation under Grant No. SES-0518772.

AuthorDerek Young [aut, cre], Tatiana Benaglia [aut], Didier Chauveau [aut], David Hunter [aut], Ryan Elmore [ctb], Thomas Hettmansperger [ctb], Hoben Thomas [ctb], Fengjuan Xuan [ctb]
Date of publication2016-01-12 00:23:37
MaintainerDerek Young <derek.young@uky.edu>
LicenseGPL (>= 2)
Version1.0.4

View on CRAN

Man pages

aug.x: Augmented Predictor Function

boot.comp: Performs Parametric Bootstrap for Sequentially Testing the...

boot.se: Performs Parametric Bootstrap for Standard Error...

CO2data: GNP and CO2 Data Set

compCDF: Plot the Component CDF

ddirichlet: Density Function for the Dirichlet Distribution

density.npEM: Normal kernel density estimate for nonparametric EM output

density.spEM: Normal kernel density estimate for semiparametric EM output

depth: Elliptical and Spherical Depth

dmvnorm: The Multivariate Normal Density

ellipse: Draw Two-Dimensional Ellipse Based on Mean and Covariance

flaremixEM: EM Algorithm for Mixtures of Regressions with Flare

gammamixEM: EM Algorithm for Mixtures of Gamma Distributions

Habituationdata: Infant habituation data

hmeEM: EM Algorithm for Mixtures-of-Experts

initializations: Initializations for Various EM Algorithms in 'mixtools'

ise.npEM: Integrated Squared Error for a selected density from npEM...

lambda: Local Estimation for Lambda in Mixtures of Regressions

lambda.pert: Perturbation of Mixing Proportions

ldmult: Log-Density for Multinomial Distribution

logisregmixEM: EM Algorithm for Mixtures of Logistic Regressions

makemultdata: Produce Cutpoint Multinomial Data

matsqrt: Calculates the Square Root of a Diagonalizable Matrix

mixtools-internal: Internal 'mixtools' Functions

multmixEM: EM Algorithm for Mixtures of Multinomials

multmixmodel.sel: Model Selection Mixtures of Multinomials

mvnormalmixEM: EM Algorithm for Mixtures of Multivariate Normals

mvnpEM: EM-like Algorithm for Nonparametric Mixture Models with...

NOdata: Ethanol Fuel Data Set

normalmixEM: EM Algorithm for Mixtures of Univariate Normals

normalmixEM2comp: Fast EM Algorithm for 2-Component Mixtures of Univariate...

normalmixMMlc: EC-MM Algorithm for Mixtures of Univariate Normals with...

npEM: Nonparametric EM-like Algorithm for Mixtures of Independent...

npMSL: Nonparametric EM-like Algorithm for Mixtures of Independent...

parseconstraint: Constraint Function

perm: Permutation Function

plotFDR: Plot False Discovery Rate (FDR) estimates from output by...

plot.MCMC: Various Plots Pertaining to Mixture Model Output Using MCMC...

plot.mixEM: Various Plots Pertaining to Mixture Models

plot.mvnpEM: Plots of Marginal Density Estimates from the mvnpEM Algorithm...

plot.npEM: Plot Nonparametric or Semiparametric EM Output

plotseq.npEM: Plotting sequences of estimates from non- or semiparametric...

plot.spEMN01: Plot mixture pdf for the semiparametric mixture model output...

poisregmixEM: EM Algorithm for Mixtures of Poisson Regressions

post.beta: Summary of Posterior Regression Coefficients in Mixtures of...

print.mvnpEM: Printing of Results from the mvnpEM Algorithm Output

print.npEM: Printing non- and semi-parametric multivariate mixture model...

RanEffdata: Simulated Data from 2-Component Mixture of Regressions with...

regcr: Add a Confidence Region or Bayesian Credible Region for...

regmixEM: EM Algorithm for Mixtures of Regressions

regmixEM.lambda: EM Algorithm for Mixtures of Regressions with Local Lambda...

regmixEM.loc: Iterative Algorithm Using EM Algorithm for Mixtures of...

regmixEM.mixed: EM Algorithm for Mixtures of Regressions with Random Effects

regmixMH: Metropolis-Hastings Algorithm for Mixtures of Regressions

regmixmodel.sel: Model Selection in Mixtures of Regressions

repnormmixEM: EM Algorithm for Mixtures of Normals with Repeated...

repnormmixmodel.sel: Model Selection in Mixtures of Normals with Repeated Measures

rmvnorm: Simulate from a Multivariate Normal Distribution

rmvnormmix: Simulate from Multivariate (repeated measures) Mixtures of...

rnormmix: Simulate from Mixtures of Normals

RodFramedata: Rod and Frame Task Data Set

RTdata: Reaction Time (RT) Data Set

RTdata2: Reaction Time (RT) Data Set \# 2

segregmixEM: ECM Algorithm for Mixtures of Regressions with Changepoints

spEM: Semiparametric EM-like Algorithm for Mixtures of Independent...

spEMsymloc: Semiparametric EM-like Algorithm for univariate symmetric...

spEMsymlocN01: semiparametric EM-like algorithm for univariate mixture in...

spregmix: EM-like Algorithm for Semiparametric Mixtures of Regressions

summary.mixEM: Summarizing EM mixture model fits

summary.mvnpEM: Summarizing Fits for Nonparametric Mixture Models with...

summary.npEM: Summarizing non- and semi-parametric multivariate mixture...

test.equality: Performs Chi-Square Tests for Scale and Location Mixtures

test.equality.mixed: Performs Chi-Square Test for Mixed Effects Mixtures

tonedata: Tone perception data

try.flare: Mixtures of Regressions with Flare MM Algorithm

Waterdata: Water-Level Task Data Set

wkde: Weighted Univariate (Normal) Kernel Density Estimate

wquantile: Weighted quantiles

Files in this package

mixtools
mixtools/inst
mixtools/inst/CITATION
mixtools/inst/doc
mixtools/inst/doc/mixtools.R
mixtools/inst/doc/mixtools.Rnw
mixtools/inst/doc/mixtools.pdf
mixtools/src
mixtools/src/KDElocscale.c
mixtools/src/KDEsymloc1comp.c
mixtools/src/new_svalues.c
mixtools/src/z.c
mixtools/src/KDEsymloc2.c
mixtools/src/KDErepeated.c
mixtools/src/sd.c
mixtools/src/mvwkde.c
mixtools/src/KDEloc2.c
mixtools/src/KDEsymloc.c
mixtools/src/multinompost.c
mixtools/src/npMSL.c
mixtools/src/normpost.c
mixtools/src/KDErepeatedbw.c
mixtools/NAMESPACE
mixtools/NEWS
mixtools/data
mixtools/data/RTdata2.RData
mixtools/data/RTdata.RData
mixtools/data/tonedata.RData
mixtools/data/NOdata.RData
mixtools/data/CO2data.RData
mixtools/data/RanEffdata.RData
mixtools/data/Waterdata.RData
mixtools/data/RodFramedata.RData
mixtools/data/Habituationdata.RData
mixtools/R
mixtools/R/poisregmixEM.R mixtools/R/kernG.R mixtools/R/perm.R mixtools/R/spregmix.R mixtools/R/regmixEMmixed.R mixtools/R/summary.npEM.R mixtools/R/bootse.R mixtools/R/spEM.R mixtools/R/npMSL.R mixtools/R/regmixEMlambda.R mixtools/R/regmix.init.R mixtools/R/bootcomp.R mixtools/R/augx.R mixtools/R/testmixedequality.R mixtools/R/normalmixEM2comp.R mixtools/R/segregmixinit.R mixtools/R/regmixmodelsel.R mixtools/R/rmvnorm.R mixtools/R/regmixmixedinit.R mixtools/R/lambdapert.R mixtools/R/regmixEM.R mixtools/R/depth.R mixtools/R/kernT.R mixtools/R/mvnormalmixinit.R mixtools/R/plot.mixEM.R mixtools/R/density.npEM.R mixtools/R/regcr.R mixtools/R/mvnormalmixEM.R mixtools/R/postbeta.R mixtools/R/lambda.R mixtools/R/logisregmixinit.R mixtools/R/segregmixEM.R mixtools/R/poisregmixinit.R mixtools/R/dmvnorm.R mixtools/R/hmeEM.R mixtools/R/multmixEM.R mixtools/R/ellipse.R mixtools/R/rnormmix.R mixtools/R/print.npEM.R mixtools/R/wquantile.R mixtools/R/npEM.R mixtools/R/ldmult.R mixtools/R/ddirichlet.R mixtools/R/regmixEMlambdainit.R mixtools/R/spEMsymloc.R mixtools/R/compcdf.R mixtools/R/kernO.R mixtools/R/regmixEMloc.R mixtools/R/kernC.R mixtools/R/matsqrt.R mixtools/R/mvnpEM.R mixtools/R/repnormmixinit.R mixtools/R/normalmixEM.R mixtools/R/makemultdata.R mixtools/R/regmixMH.R mixtools/R/kernB.R mixtools/R/multmixinit.R mixtools/R/ise.npEM.R mixtools/R/repnormmixEM.R mixtools/R/normalmixMMlc.R mixtools/R/logisregmixEM.R mixtools/R/FDR_spEM.R mixtools/R/gammamixEM.R mixtools/R/tryflare.R mixtools/R/flaremixinit.R mixtools/R/plotMCMC.R mixtools/R/density.spEM.R mixtools/R/plot.npEM.R mixtools/R/plotseq.npEM.R mixtools/R/parse.constraints.R mixtools/R/wkde.R mixtools/R/summary.mixEM.R mixtools/R/multmixmodelsel.R mixtools/R/zzz.R mixtools/R/testequality.R mixtools/R/gammamixinit.R mixtools/R/flaremixEM.R mixtools/R/normalmixinit.R mixtools/R/rmvnormmix.R mixtools/R/repnormmixmodelsel.R
mixtools/vignettes
mixtools/vignettes/mixtools.Rnw
mixtools/vignettes/mixtools.bib
mixtools/MD5
mixtools/build
mixtools/build/vignette.rds
mixtools/DESCRIPTION
mixtools/man
mixtools/man/regmixmodel.sel.Rd mixtools/man/multmixmodel.sel.Rd mixtools/man/makemultdata.Rd mixtools/man/mixtools-internal.Rd mixtools/man/plotFDR.Rd mixtools/man/rmvnorm.Rd mixtools/man/normalmixEM.Rd mixtools/man/regmixMH.Rd mixtools/man/plot.npEM.Rd mixtools/man/logisregmixEM.Rd mixtools/man/spEM.Rd mixtools/man/boot.comp.Rd mixtools/man/NOdata.Rd mixtools/man/print.npEM.Rd mixtools/man/plot.spEMN01.Rd mixtools/man/plot.mvnpEM.Rd mixtools/man/wkde.Rd mixtools/man/ise.npEM.Rd mixtools/man/ellipse.Rd mixtools/man/parseconstraint.Rd mixtools/man/depth.Rd mixtools/man/flaremixEM.Rd mixtools/man/summary.npEM.Rd mixtools/man/test.equality.mixed.Rd mixtools/man/rmvnormmix.Rd mixtools/man/RTdata.Rd mixtools/man/RodFramedata.Rd mixtools/man/hmeEM.Rd mixtools/man/tonedata.Rd mixtools/man/aug.x.Rd mixtools/man/repnormmixEM.Rd mixtools/man/spregmix.Rd mixtools/man/mvnpEM.Rd mixtools/man/wquantile.Rd mixtools/man/rnormmix.Rd mixtools/man/print.mvnpEM.Rd mixtools/man/lambda.Rd mixtools/man/try.flare.Rd mixtools/man/plot.mixEM.Rd mixtools/man/poisregmixEM.Rd mixtools/man/ddirichlet.Rd mixtools/man/regmixEM.lambda.Rd mixtools/man/CO2data.Rd mixtools/man/spEMsymlocN01.Rd mixtools/man/RanEffdata.Rd mixtools/man/density.spEM.Rd mixtools/man/RTdata2.Rd mixtools/man/ldmult.Rd mixtools/man/summary.mvnpEM.Rd mixtools/man/initializations.Rd mixtools/man/summary.mixEM.Rd mixtools/man/post.beta.Rd mixtools/man/perm.Rd mixtools/man/multmixEM.Rd mixtools/man/normalmixMMlc.Rd mixtools/man/boot.se.Rd mixtools/man/density.npEM.Rd mixtools/man/regmixEM.Rd mixtools/man/normalmixEM2comp.Rd mixtools/man/repnormmixmodel.sel.Rd mixtools/man/npMSL.Rd mixtools/man/plot.MCMC.Rd mixtools/man/gammamixEM.Rd mixtools/man/test.equality.Rd mixtools/man/segregmixEM.Rd mixtools/man/regmixEM.loc.Rd mixtools/man/matsqrt.Rd mixtools/man/npEM.Rd mixtools/man/Habituationdata.Rd mixtools/man/plotseq.npEM.Rd mixtools/man/Waterdata.Rd mixtools/man/regmixEM.mixed.Rd mixtools/man/spEMsymloc.Rd mixtools/man/dmvnorm.Rd mixtools/man/regcr.Rd mixtools/man/mvnormalmixEM.Rd mixtools/man/compCDF.Rd mixtools/man/lambda.pert.Rd

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