plotly_mixMCMC: Various Plots Pertaining to Mixture Model Output Using MCMC...

In mixtools: Tools for Analyzing Finite Mixture Models

Various Plots Pertaining to Mixture Model Output Using MCMC Methods using plotly

Description

This is an updated version of plot.mixMCMC. For technical details, please refer to plot.mixMCMC.

Usage

 
plotly_mixMCMC(x, trace.plot = TRUE, summary.plot = FALSE, burnin = 2000, 
               credit.region = 0.95, col.cr = NULL,
               cex.trace = 3, width.trace = 3, 
               cex.summary = 3, width.summary = 1,
               title.trace = "", title.trace.x = 0.5, 
               title.trace.y = 0.95, title.trace.size = 15,
               xlab.trace = "Index", xlab.trace.size = 15, xtick.trace.size = 15,
               ylab.trace = NULL, ylab.trace.size = 15, ytick.trace.size = 15,
               title.summary = "Credible Regions", title.summary.x = 0.5, 
               title.summary.y = 0.95, title.summary.size = 15,
               xlab.summary = "Predictor", xlab.summary.size = 15, 
               xtick.summary.size = 15,
               ylab.summary = "Response", ylab.summary.size = 15, 
               ytick.summary.size = 15
) 

Arguments

x	An object of class mixMCMC.
trace.plot	If TRUE, trace plots of the various parameters estimated by the MCMC methods is given.
summary.plot	Graphics pertaining to certain mixture models. The details are given below.
burnin	The values 1 to burnin are dropped when producing the plots in summary.plots.
credit.region	Confidence level of credit region.
col.cr	Color of credit region. Number of color specified needs to be consistent with number of components.
cex.trace	Dot size of trace plots.
width.trace	Line width of trace plots.
cex.summary	Dot size of summary plots.
width.summary	Line width of summary plots.
title.trace	Text of the main title of trace plots.
title.trace.x	Horizontal position of main title of trace plots.
title.trace.y	Vertical position of main title of trace plots.
title.trace.size	Text sise of main title of trace plots.
xlab.trace	Label of X-axis of trace plots.
xlab.trace.size	Size of the lable of X-axis of trace plots.
xtick.trace.size	Size of tick lables of X-axis of trace plots.
ylab.trace	Label of Y-axis of trace plots.
ylab.trace.size	Size of the lable of Y-axis of trace plots.
ytick.trace.size	Size of tick lables of Y-axis of trace plots.
title.summary	Text of the main title of summar plot.
title.summary.x	Horizontal position of main title of summary plot.
title.summary.y	Vertical position of main title of summary plot.
title.summary.size	Text sise of main title of summary plot.
xlab.summary	Label of X-axis of summary plot.
xlab.summary.size	Size of the lable of X-axis of summary plot.
xtick.summary.size	Size of tick lables of X-axis of summary plot.
ylab.summary	Label of Y-axis of summary plot.
ylab.summary.size	Size of the lable of Y-axis of summary plot.
ytick.summary.size	Size of tick lables of Y-axis of summary plot.

Value

plotly_mixMCMC returns trace plots of the various parameters estimated by the MCMC methods for all objects of class mixMCMC. In addition, other plots may be produced for the following k-component mixture model functions:

regmixMH

Credible bands for the regression lines in a mixture of linear regressions. See regcr for more details.

See Also

regcr, plot.mixMCMC

Examples

 
## Not run: 
data(NOdata)
attach(NOdata)
set.seed(100)
beta <- matrix(c(1.3, -0.1, 0.6, 0.1), 2, 2)
sigma <- c(.02, .05)
MH.out <- regmixMH(Equivalence, NO, beta = beta, s = sigma,
                   sampsize = 2500, omega = .0013)
plotly_mixMCMC(x = MH.out, summary.plot = TRUE, col.cr = c("red", "green"))

## End(Not run)

mixtools documentation built on Dec. 5, 2022, 5:23 p.m.