extract_inner_fselect_archives: Extract Inner Feature Selection Archives

In mlr3fselect: Feature Selection for 'mlr3'

Extract Inner Feature Selection Archives

Description

Extract inner feature selection archives of nested resampling. Implemented for mlr3::ResampleResult and mlr3::BenchmarkResult. The function iterates over the AutoFSelector objects and binds the archives to a data.table::data.table(). AutoFSelector must be initialized with store_fselect_instance = TRUE and resample() or benchmark() must be called with store_models = TRUE.

Usage

extract_inner_fselect_archives(x, exclude_columns = "uhash")

Arguments

x	(mlr3::ResampleResult | mlr3::BenchmarkResult).
exclude_columns	(character()) Exclude columns from result table. Set to NULL if no column should be excluded.

Value

data.table::data.table().

Data structure

The returned data table has the following columns:

• experiment (integer(1))
  Index, giving the according row number in the original benchmark grid.

• iteration (integer(1))
  Iteration of the outer resampling.

• One column for each feature of the task.

• One column for each performance measure.

• runtime_learners (numeric(1))
  Sum of training and predict times logged in learners per mlr3::ResampleResult / evaluation. This does not include potential overhead time.

• timestamp (POSIXct)
  Time stamp when the evaluation was logged into the archive.

• batch_nr (integer(1))
  Feature sets are evaluated in batches. Each batch has a unique batch number.

• resample_result (mlr3::ResampleResult)
  Resample result of the inner resampling.

• task_id (character(1)).

• learner_id (character(1)).

• resampling_id (character(1)).

Examples

# Nested Resampling on Palmer Penguins Data Set

# create auto fselector
at = auto_fselector(
  fselector = fs("random_search"),
  learner = lrn("classif.rpart"),
  resampling = rsmp ("holdout"),
  measure = msr("classif.ce"),
  term_evals = 4)

resampling_outer = rsmp("cv", folds = 2)
rr = resample(tsk("penguins"), at, resampling_outer, store_models = TRUE)

# extract inner archives
extract_inner_fselect_archives(rr)

mlr3fselect documentation built on March 7, 2023, 5:31 p.m.