move: Visualizing and Analyzing Animal Track Data
Version 2.1.0

Contains functions to access movement data stored in 'movebank.org' as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.

Browse man pages Browse package API and functions Browse package files

AuthorBart Kranstauber <bart.kranstauber@ieu.uzh.ch>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Date of publication2016-08-23 15:25:13
MaintainerBart Kranstauber <bart.kranstauber@ieu.uzh.ch>
LicenseGPL (>= 3)
Version2.1.0
URL http://computational-ecology.com/main-move.html
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("move")

Man pages

angle: angle information from a track or track stack
as.data.frame: Return a Data Frame
brownian.bridge.dyn: Creates a DBBMM object
brownian.motion.variance.dyn: Calculates the dynamic brownian motion variance
burst: Bursting a track
burstId: Returns burstId
citations: Extract the citation of a Move or MoveStack object
contour: Contour plot
coordinates: Extract the track coordinates from a Move/MoveStack object
corridor: Corridor
DBBMM-class: The DBBMM class
DBBMMStack-class: The DBBMMStack class
dBGBvariance-class: Class to store the orthogonal and parallel variance
dBMvarianceTmp-class: dBMvarianceTmp class
distance: distance information from a track or track stack
dynBGB: dynBGB class
dynBGB-methods: Calculation of the dynamic Bivariate Gausian Bridge
dynBGBvariance-methods: calculate variance for a track using a running window
emd: Earth movers distance
equalProj: Checks projections for being equal
fishers: A MoveStack
getMotionVariance: Returns the estimated motion variance
getMovebank: Creates an URL to download Data from Movebank
getMovebankAnimals: Animals, tags and IDs in a Movebank study
getMovebankData: Download data from Movebank
getMovebankID: Study ID
getMovebankSensorAttributes: Available sensor attributes
getMovebankSensors: Information about Movebank sensors
getMovebankStudies: All studies on Movebank
getMovebankStudy: Returns study information
getVolumeUD: Modify a UD raster
hrBootstrap: Calculates and plot the Minimum Convex Polygon for a track
idData: Functions for dealing with the idData
interpolateTime: Interpolate a trajectory
leroy: GPS track data from a fisher
lines: Plotting a track as lines
move: Create a Move object
move2ade: Convert a Move or MoveStack object to adehabitat compatible...
movebankLogin: Login into Movebank
MovebankLogin-class: The MovebankLogin class
MoveBurst-class: MoveBurst class
Move-class: The Move class
move-package: An overview of the functions in this package
moveStack: Creating a MoveStack
MoveStack-class: The MoveStack class
n.indiv: Extract the number of individuals of a Move or MoveStack...
n.locs: Extract the number of locations of a Move or MoveStack object
outerProbability: Calculates the probabilities at the edges of a raster
plot: Plotting track or raster
plotBursts: Plotting the centroids of a track
points: Plotting the points of a track
raster: Extract raster from DBBMM
raster2contour: Convert raster to contour lines
ricky: GPS track data from a fisher
searchMovebankStudies: Search for a study
seglength: Calculates the segment length of a track
sensor: Extract the sensor of a Move or MoveStack object
show: Show a Move object
speed: speed information from a track or track stack
split: Splitting a MoveStack
spTransform: Transform Move object projection method
subset: Returns a single object from a MoveStack
summary: A summary of a DBBMM or DBBMMStack, Move or MoveStack object
time: time information from a track or track stack
time.lag: Calculates the time lags between the coordinates
timeLag: Calculates the time lags between the coordinates
timestamps: Extract the timestamps of a Move or MoveStack object
trackId: Returns trackId
turnAngleGc: Calculates turning angles on great circle tracks
UD-class: The UD class
udData: Dynamic brownian bridges
UDStack: Creating UDStack objects
unUsedRecords: Creates unused records data
unUsedRecords-class: .unUsedRecords and .unUsedRecordsStack class

Functions

.MoveGeneral-class Man page
.MoveTrack Man page
.MoveTrack-class Man page
.MoveTrackSingle Man page
.MoveTrackSingle-class Man page
.MoveTrackSingleBurst-class Man page
.UD Man page
.UD-class Man page
.UDStack-class Man page
.unUsedRecords-class Man page
.unUsedRecordsStack-class Man page
DBBMM Man page
DBBMM-class Man page
DBBMMStack Man page
DBBMMStack-class Man page
Move-class Man page
MoveBurst-class Man page
MoveStack Man page
MoveStack-class Man page
MovebankLogin Man page
MovebankLogin-class Man page
UDStack Man page
UDStack,.UDBurstStack-method Man page
UDStack,RasterBrick-method Man page
UDStack,RasterStack-method Man page
UDStack,list-method Man page
UDStack-class Man page
[,.MoveTrack,ANY,ANY-method Man page
[,.MoveTrackSingleBurst,ANY,ANY-method Man page
[,.MoveTrackStack,ANY,ANY-method Man page
[,.unUsedRecords,ANY,ANY-method Man page
[,.unUsedRecordsStack,ANY,ANY-method Man page
[,MoveStack,ANY,ANY-class Man page
[,MoveStack,ANY,ANY-method Man page
[,dBGBvariance,ANY,ANY-method Man page
[,dBMvariance,ANY,ANY-method Man page
[,dBMvarianceBurst,ANY,ANY-method Man page
[,dBMvarianceStack,ANY,ANY-method Man page
[[,.MoveTrackStack,character,missing-method Man page
[[,.MoveTrackStack,logical,missing-method Man page
[[,.MoveTrackStack,numeric,missing-method Man page
[[,MoveStack,character,missing-method Man page
angle Man page
angle,.MoveTrackSingle-method Man page
angle,.MoveTrackStack-method Man page
angleSummary Man page
angleSummary,.MoveTrackSingle-method Man page
angleSummary,.MoveTrackStack-method Man page
as.data.frame Man page
as.data.frame,Move-method Man page
brownian.bridge.dyn Man page
brownian.bridge.dyn,.MoveTrackSingle,RasterLayer,missing,numeric Man page
brownian.bridge.dyn,.MoveTrackSingle,missing,missing,numeric-met Man page
brownian.bridge.dyn,ANY,RasterLayer,missing,character-method Man page
brownian.bridge.dyn,Move,missing,numeric,numeric-method Man page
brownian.bridge.dyn,Move,numeric,missing,numeric-method Man page
brownian.bridge.dyn,MoveStack,RasterLayer,missing,numeric-method Man page
brownian.bridge.dyn,SpatialPointsDataFrame,missing,numeric,ANY-m Man page
brownian.bridge.dyn,SpatialPointsDataFrame,numeric,missing,ANY-m Man page
brownian.bridge.dyn,dBMvariance,RasterLayer,missing,numeric-meth Man page
brownian.bridge.dyn,dBMvarianceBurst,RasterLayer,missing,numeric Man page
brownian.motion.variance Source code
brownian.motion.variance.dyn Man page
brownian.motion.variance.dyn,.MoveTrackSingle,numeric,numeric,nu Man page
brownian.motion.variance.dyn,.MoveTrackSingleBurst,numeric,numer Man page
burst Man page
burst,.MoveTrackSingleBurst,factor-method Man page
burst,.MoveTrackSingleBurst,missing-method Man page
burst,ANY,character-method Man page
burst,ANY,numeric-method Man page
burst,Move,factor-method Man page
burstId Man page
burstId,.MoveTrackSingleBurst-method Man page
burstId,MoveBurst-method Man page
burstId<- Man page
burstId<-,.MoveTrackSingleBurst,character-method Man page
burstId<-,.MoveTrackSingleBurst,factor-method Man page
citations Man page
citations,.MoveGeneral-method Man page
citations<- Man page
citations<-,.MoveGeneral-method Man page
contour Man page
contour,.UD-method Man page
contour,.UDStack-method Man page
coordinates Man page
coordinates,Move-method Man page
corridor Man page
corridor,.MoveTrackSingle-method Man page
corridor,.MoveTrackStack-method Man page
dBGBvariance-class Man page
dBGBvarianceTmp-class Man page
dBMvarianceTmp-class Man page
dbbmmstack Man page
distance Man page
distance,.MoveTrackSingle,missing-method Man page
distance,.MoveTrackStack,missing-method Man page
distanceSummary Man page
distanceSummary,.MoveTrackSingle-method Man page
distanceSummary,.MoveTrackStack-method Man page
dynBGB Man page
dynBGB,.MoveTrackSingle,ANY,character-method Man page
dynBGB,.MoveTrackSingle,RasterLayer,numeric-method Man page
dynBGB,.MoveTrackSingle,missing,ANY-method Man page
dynBGB,.MoveTrackSingle,numeric,ANY-method Man page
dynBGB,dBGBvariance,RasterLayer,numeric-method Man page
dynBGB-class Man page
dynBGBvariance Man page Man page
dynBGBvariance,.MoveTrackSingle,numeric,numeric,numeric-method Man page
dynBGBvarianceTmp Man page
emd Man page
emd,RasterLayer,RasterLayer-method Man page
emd,RasterStackBrick,RasterStackBrick-method Man page
emd,RasterStackBrick,missing-method Man page
emd,SpatialPoints,SpatialPoints-method Man page
equalProj Man page
equalProj,list-method Man page
fishers Man page
getMotionVariance Man page
getMotionVariance,DBBMM-method Man page
getMotionVariance,DBBMMBurstStack-method Man page
getMotionVariance,DBBMMStack-method Man page
getMotionVariance,dBGBvarianceTmp-method Man page
getMotionVariance,dBMvarianceStack-method Man page
getMotionVariance,dBMvarianceTmp-method Man page
getMotionVariance,dynBGB-method Man page
getMovebank Man page
getMovebank,character,MovebankLogin-method Man page
getMovebank,character,missing-method Man page
getMovebankAnimals Man page
getMovebankAnimals,ANY,MovebankLogin-method Man page
getMovebankAnimals,ANY,missing-method Man page
getMovebankAnimals,character,MovebankLogin-method Man page
getMovebankAnimals,numeric,MovebankLogin-method Man page
getMovebankData Man page
getMovebankData,ANY,ANY,MovebankLogin-method Man page
getMovebankData,ANY,ANY,missing-method Man page
getMovebankData,character,ANY,MovebankLogin-method Man page
getMovebankData,numeric,character,MovebankLogin-method Man page
getMovebankData,numeric,missing,MovebankLogin-method Man page
getMovebankData,numeric,numeric,MovebankLogin-method Man page
getMovebankID Man page
getMovebankID,character,MovebankLogin-method Man page
getMovebankID,character,missing-method Man page
getMovebankSensors Man page
getMovebankSensors,ANY,MovebankLogin-method Man page
getMovebankSensors,ANY,missing-method Man page
getMovebankSensors,character,MovebankLogin-method Man page
getMovebankSensors,missing,MovebankLogin-method Man page
getMovebankSensors,missing,missing-method Man page
getMovebankSensors,numeric,MovebankLogin-method Man page
getMovebankSensorsAttributes Man page
getMovebankSensorsAttributes,ANY,MovebankLogin-method Man page
getMovebankSensorsAttributes,character,MovebankLogin-method Man page
getMovebankSensorsAttributes,numeric,MovebankLogin-method Man page
getMovebankStudies Man page
getMovebankStudies,MovebankLogin-method Man page
getMovebankStudies,missing-method Man page
getMovebankStudy Man page
getMovebankStudy,ANY,MovebankLogin-method Man page
getMovebankStudy,ANY,missing-method Man page
getMovebankStudy,character,MovebankLogin-method Man page
getMovebankStudy,numeric,MovebankLogin-method Man page
getVolumeUD Man page
getVolumeUD,.UD-method Man page
getVolumeUD,.UDStack-method Man page
hrBootstrap Man page
hrBootstrap,.MoveTrackStack-method Man page
hrBootstrap,SpatialPoints-method Man page
idData Man page
idData,.MoveTrack-method Man page
idData<- Man page
idData<-,.MoveTrack,ANY,ANY,ANY-method Man page
idData<-,.MoveTrack,missing,missing,data.frame-method Man page
interpolateTime Man page
interpolateTime,.MoveTrackSingle,POSIXct-method Man page
interpolateTime,.MoveTrackSingle,difftime-method Man page
interpolateTime,.MoveTrackSingle,numeric-method Man page
leroy Man page
leroydbbmm Man page
lines Man page
lines,.MoveTrackSingle-method Man page
lines,.MoveTrackSingleBurst-method Man page
lines,.MoveTrackStack-method Man page
llBGBvarRcpp Source code
move Man page
move,character,missing,missing,missing,missing-method Man page
move,connection,missing,missing,missing,missing-method Man page
move,ltraj,missing,missing,missing,missing-method Man page
move,numeric,numeric,POSIXct,data.frame,CRS-method Man page
move,numeric,numeric,POSIXct,data.frame,character-method Man page
move,numeric,numeric,POSIXct,data.frame,missing-method Man page
move,numeric,numeric,POSIXct,missing,ANY-method Man page
move-package Man page
move2ade Man page
move2ade,.MoveTrackSingle-method Man page
move2ade,.MoveTrackStack-method Man page
moveStack Man page
moveStack,character-method Man page
moveStack,list-method Man page
movebankLogin Man page
movebankLogin,character,character-method Man page
movebankLogin,character,missing-method Man page
movebankLogin,missing,character-method Man page
movebankLogin,missing,missing-method Man page
n.indiv Man page
n.indiv,.MoveTrackStack-method Man page
n.indiv,Move-method Man page
n.locs Man page
n.locs,.MoveTrackStack-method Man page
n.locs,SpatialPointsDataFrame-method Man page
outerProbability Man page
outerProbability,DBBMMStack-method Man page
outerProbability,RasterLayer-method Man page
plot Man page
plot,.MoveTrackSingle,missing-method Man page
plot,.MoveTrackSingleBurst,missing-method Man page
plot,.MoveTrackStack,missing-method Man page
plotBursts Man page
plotBursts,.MoveTrackSingleBurst-method Man page
plotBursts,list-method Man page
points Man page
points,.MoveTrackSingle-method Man page
points,.MoveTrackSingleBurst-method Man page
points,.MoveTrackStack-method Man page
raster Man page
raster,DBBMM-method Man page
raster,DBBMMStack-method Man page
raster2contour Man page
raster2contour,.UD-method Man page
raster2contour,.UDStack-method Man page
ricky Man page
searchMovebankStudies Man page
searchMovebankStudies,character,MovebankLogin-method Man page
searchMovebankStudies,character,missing-method Man page
seglength Man page
seglength,SpatialPointsDataFrame-method Man page
sensor Man page
sensor,.MoveTrack-method Man page
sensor,.unUsedRecords-method Man page
show Man page
show,.MoveGeneral-method Man page
show,.MoveTrack-method Man page
show,.MoveTrackSingle-method Man page
show,.MoveTrackSingleBurst-method Man page
show,.MoveTrackStack-method Man page
show,.unUsedRecords-method Man page
show,Move-method Man page
show,MoveBurst-method Man page
show,MoveStack-method Man page
show,dBMvariance-method Man page
show,dBMvarianceTmp-method Man page
spTransform Man page
spTransform,Move,character-method Man page
spTransform,Move,missing-method Man page
speed Man page
speed,.MoveTrackSingle-method Man page
speed,.MoveTrackStack-method Man page
speedSummary Man page
speedSummary,.MoveTrackSingle-method Man page
speedSummary,.MoveTrackStack-method Man page
split Man page
split,.MoveTrackSingleBurst,missing-method Man page
split,.MoveTrackStack,missing-method Man page
split,.UDStack,missing-method Man page
split,DBBMMStack,missing-method Man page
split,MoveStack,missing-method Man page
summary Man page
summary,.MoveTrackSingle-method Man page
summary,.MoveTrackStack-method Man page
summary,.UD-method Man page
summary,.UDStack-method Man page
time.lag Man page
time.lag,.MoveTrackSingle-method Man page
time.lag,.MoveTrackStack-method Man page
timeLag Man page
timeLag,.MoveTrackSingle-method Man page
timeLag,.MoveTrackStack-method Man page
timeSummary Man page
timeSummary,.MoveTrackSingle-method Man page
timeSummary,.MoveTrackStack-method Man page
timestamps Man page
timestamps,.MoveTrack-method Man page
timestamps,.MoveTrackSingle-method Man page
timestamps,.unUsedRecords-method Man page
timestamps<- Man page
timestamps<-,.MoveTrack-method Man page
trackId Man page
trackId,.MoveTrackStack-method Man page
trackId,.unUsedRecordsStack-method Man page
trackId,MoveStack-method Man page
turnAngleGc Man page
turnAngleGc,.MoveTrackSingle-method Man page
turnAngleGc,.MoveTrackStack-method Man page
unUsedRecords Man page
unUsedRecords,.unUsedRecords-method Man page
unUsedRecords,.unUsedRecordsStack-method Man page
unUsedRecords<- Man page
unUsedRecords<-,.MoveTrackSingle,logical-method Man page
unUsedRecords<-,.MoveTrackStack,logical-method Man page

Files

inst
inst/extdata
inst/extdata/createsRDataFile.R
inst/extdata/move.RData
inst/extdata/leroy.csv.gz
inst/doc
inst/doc/move.Rnw
inst/doc/browseMovebank.pdf
inst/doc/move.R
inst/doc/browseMovebank.R
inst/doc/browseMovebank.Rnw
inst/doc/move.pdf
tests
tests/testthat
tests/testthat/test.brownian.bridge.dyn.R
tests/testthat/test.move.R
tests/testthat/test.emd.R
tests/testthat/test.moveAde.R
tests/testthat/test.subSet.R
tests/testthat/test.measures.R
tests/testthat/test.idData.R
tests/testthat/test.extentCalc.R
tests/testthat/test.getMotionVariance.R
tests/testthat/test.burst.R
tests/testthat/test.interpolateTime.R
tests/testthat/test.dBGB.R
tests/testthat/test.turnAngle.R
tests/testthat/test.moveStack.R
tests/testthat/test.seglength.R
tests/testthat/test.citations.R
tests/testthat/test.unUsed.R
tests/testthat/test.spTransform.R
tests/testthat/test.smallFunctions.R
tests/testthat/test.storedData.R
tests/test-all.R
src
src/bgbVarRcpp.cpp
src/emd_hat_signatures_interface.h
src/bgbVar.c
src/emd.cpp
src/EMD_DEFS.h
src/emd_hat_impl.h
src/bgb_bbmm.c
src/emd_hat.h
src/RcppExports.cpp
src/min_cost_flow.h
src/flow_utils.h
NAMESPACE
data
data/leroydbbmm.RData
data/dbbmmstack.RData
data/leroy.RData
data/datalist
data/ricky.RData
data/fishers.RData
R
R/dBGB.R
R/outerProbability.R
R/emd.R
R/speed.R
R/nindiv.R
R/timelag.R
R/getMotionVariance.R
R/angle.R
R/subset.R
R/equalProj.R
R/turnAngle.R
R/move2ade.R
R/burst.R
R/timestamps.R
R/citations.R
R/points.R
R/plot.R
R/trackId.R
R/data.frame.R
R/spatialLines.R
R/lineMidpoint.R
R/WebImport.R
R/sensor.R
R/move.R
R/show.R
R/seglength.R
R/burstId.R
R/idData.R
R/extractDBMvar.R
R/extcalc.R
R/getVolumeUD.R
R/time.R
R/contour.R
R/nlocs.R
R/corridor.R
R/RcppExports.R
R/lines.R
R/hrBootstrap.R
R/interpolateTime.R
R/print.R
R/plotBursts.R
R/AAClass.R
R/split.R
R/moveStack.R
R/raster2contour.R
R/spTransform.R
R/unUsedRecords.R
R/Summary.R
R/brownianmotionvariancedyn.R
R/UDStack.R
R/brownianbridgedyn.R
R/distance.R
vignettes
vignettes/move.Rnw
vignettes/a.Rdata
vignettes/browseMovebank.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/dynBGB-methods.Rd
man/corridor.Rd
man/n.indiv.Rd
man/searchMovebankStudies.Rd
man/idData.Rd
man/getVolumeUD.Rd
man/angle.Rd
man/seglength.Rd
man/show.Rd
man/emd.Rd
man/unUsedRecords.Rd
man/brownian.bridge.dyn.Rd
man/DBBMMStack-class.Rd
man/MovebankLogin-class.Rd
man/move-package.Rd
man/equalProj.Rd
man/as.data.frame.Rd
man/trackId.Rd
man/getMovebankStudy.Rd
man/moveStack.Rd
man/MoveStack-class.Rd
man/DBBMM-class.Rd
man/dynBGB.Rd
man/getMovebankData.Rd
man/citations.Rd
man/burstId.Rd
man/turnAngleGc.Rd
man/MoveBurst-class.Rd
man/getMovebankID.Rd
man/ricky.Rd
man/burst.Rd
man/distance.Rd
man/sensor.Rd
man/movebankLogin.Rd
man/speed.Rd
man/UD-class.Rd
man/spTransform.Rd
man/split.Rd
man/unUsedRecords-class.Rd
man/dynBGBvariance-methods.Rd
man/points.Rd
man/lines.Rd
man/raster2contour.Rd
man/time.Rd
man/udData.Rd
man/coordinates.Rd
man/move2ade.Rd
man/UDStack.Rd
man/dBMvarianceTmp-class.Rd
man/fishers.Rd
man/dBGBvariance-class.Rd
man/leroy.Rd
man/getMovebankAnimals.Rd
man/getMovebankSensors.Rd
man/getMovebankSensorAttributes.Rd
man/contour.Rd
man/time.lag.Rd
man/interpolateTime.Rd
man/brownian.motion.variance.dyn.Rd
man/hrBootstrap.Rd
man/timestamps.Rd
man/Move-class.Rd
man/raster.Rd
man/timeLag.Rd
man/getMovebank.Rd
man/getMovebankStudies.Rd
man/plotBursts.Rd
man/outerProbability.Rd
man/move.Rd
man/plot.Rd
man/getMotionVariance.Rd
man/n.locs.Rd
man/subset.Rd
man/summary.Rd
move documentation built on May 20, 2017, 2:06 a.m.