move: Visualizing and Analyzing Animal Track Data

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Contains functions to access movement data stored in 'movebank.org' as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.

Author
Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Date of publication
2016-08-23 15:25:13
Maintainer
Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>
License
GPL (>= 3)
Version
2.1.0
URLs

View on CRAN

Man pages

angle
angle information from a track or track stack
as.data.frame
Return a Data Frame
brownian.bridge.dyn
Creates a DBBMM object
brownian.motion.variance.dyn
Calculates the dynamic brownian motion variance
burst
Bursting a track
burstId
Returns burstId
citations
Extract the citation of a Move or MoveStack object
contour
Contour plot
coordinates
Extract the track coordinates from a Move/MoveStack object
corridor
Corridor
DBBMM-class
The DBBMM class
DBBMMStack-class
The DBBMMStack class
dBGBvariance-class
Class to store the orthogonal and parallel variance
dBMvarianceTmp-class
dBMvarianceTmp class
distance
distance information from a track or track stack
dynBGB
dynBGB class
dynBGB-methods
Calculation of the dynamic Bivariate Gausian Bridge
dynBGBvariance-methods
calculate variance for a track using a running window
emd
Earth movers distance
equalProj
Checks projections for being equal
fishers
A MoveStack
getMotionVariance
Returns the estimated motion variance
getMovebank
Creates an URL to download Data from Movebank
getMovebankAnimals
Animals, tags and IDs in a Movebank study
getMovebankData
Download data from Movebank
getMovebankID
Study ID
getMovebankSensorAttributes
Available sensor attributes
getMovebankSensors
Information about Movebank sensors
getMovebankStudies
All studies on Movebank
getMovebankStudy
Returns study information
getVolumeUD
Modify a UD raster
hrBootstrap
Calculates and plot the Minimum Convex Polygon for a track
idData
Functions for dealing with the idData
interpolateTime
Interpolate a trajectory
leroy
GPS track data from a fisher
lines
Plotting a track as lines
move
Create a Move object
move2ade
Convert a Move or MoveStack object to adehabitat compatible...
movebankLogin
Login into Movebank
MovebankLogin-class
The MovebankLogin class
MoveBurst-class
MoveBurst class
Move-class
The Move class
move-package
An overview of the functions in this package
moveStack
Creating a MoveStack
MoveStack-class
The MoveStack class
n.indiv
Extract the number of individuals of a Move or MoveStack...
n.locs
Extract the number of locations of a Move or MoveStack object
outerProbability
Calculates the probabilities at the edges of a raster
plot
Plotting track or raster
plotBursts
Plotting the centroids of a track
points
Plotting the points of a track
raster
Extract raster from DBBMM
raster2contour
Convert raster to contour lines
ricky
GPS track data from a fisher
searchMovebankStudies
Search for a study
seglength
Calculates the segment length of a track
sensor
Extract the sensor of a Move or MoveStack object
show
Show a Move object
speed
speed information from a track or track stack
split
Splitting a MoveStack
spTransform
Transform Move object projection method
subset
Returns a single object from a MoveStack
summary
A summary of a DBBMM or DBBMMStack, Move or MoveStack object
time
time information from a track or track stack
time.lag
Calculates the time lags between the coordinates
timeLag
Calculates the time lags between the coordinates
timestamps
Extract the timestamps of a Move or MoveStack object
trackId
Returns trackId
turnAngleGc
Calculates turning angles on great circle tracks
UD-class
The UD class
udData
Dynamic brownian bridges
UDStack
Creating UDStack objects
unUsedRecords
Creates unused records data
unUsedRecords-class
.unUsedRecords and .unUsedRecordsStack class

Files in this package

move
move/inst
move/inst/extdata
move/inst/extdata/createsRDataFile.R
move/inst/extdata/move.RData
move/inst/extdata/leroy.csv.gz
move/inst/doc
move/inst/doc/move.Rnw
move/inst/doc/browseMovebank.pdf
move/inst/doc/move.R
move/inst/doc/browseMovebank.R
move/inst/doc/browseMovebank.Rnw
move/inst/doc/move.pdf
move/tests
move/tests/testthat
move/tests/testthat/test.brownian.bridge.dyn.R
move/tests/testthat/test.move.R
move/tests/testthat/test.emd.R
move/tests/testthat/test.moveAde.R
move/tests/testthat/test.subSet.R
move/tests/testthat/test.measures.R
move/tests/testthat/test.idData.R
move/tests/testthat/test.extentCalc.R
move/tests/testthat/test.getMotionVariance.R
move/tests/testthat/test.burst.R
move/tests/testthat/test.interpolateTime.R
move/tests/testthat/test.dBGB.R
move/tests/testthat/test.turnAngle.R
move/tests/testthat/test.moveStack.R
move/tests/testthat/test.seglength.R
move/tests/testthat/test.citations.R
move/tests/testthat/test.unUsed.R
move/tests/testthat/test.spTransform.R
move/tests/testthat/test.smallFunctions.R
move/tests/testthat/test.storedData.R
move/tests/test-all.R
move/src
move/src/bgbVarRcpp.cpp
move/src/emd_hat_signatures_interface.h
move/src/bgbVar.c
move/src/emd.cpp
move/src/EMD_DEFS.h
move/src/emd_hat_impl.h
move/src/bgb_bbmm.c
move/src/emd_hat.h
move/src/RcppExports.cpp
move/src/min_cost_flow.h
move/src/flow_utils.h
move/NAMESPACE
move/data
move/data/leroydbbmm.RData
move/data/dbbmmstack.RData
move/data/leroy.RData
move/data/datalist
move/data/ricky.RData
move/data/fishers.RData
move/R
move/R/dBGB.R
move/R/outerProbability.R
move/R/emd.R
move/R/speed.R
move/R/nindiv.R
move/R/timelag.R
move/R/getMotionVariance.R
move/R/angle.R
move/R/subset.R
move/R/equalProj.R
move/R/turnAngle.R
move/R/move2ade.R
move/R/burst.R
move/R/timestamps.R
move/R/citations.R
move/R/points.R
move/R/plot.R
move/R/trackId.R
move/R/data.frame.R
move/R/spatialLines.R
move/R/lineMidpoint.R
move/R/WebImport.R
move/R/sensor.R
move/R/move.R
move/R/show.R
move/R/seglength.R
move/R/burstId.R
move/R/idData.R
move/R/extractDBMvar.R
move/R/extcalc.R
move/R/getVolumeUD.R
move/R/time.R
move/R/contour.R
move/R/nlocs.R
move/R/corridor.R
move/R/RcppExports.R
move/R/lines.R
move/R/hrBootstrap.R
move/R/interpolateTime.R
move/R/print.R
move/R/plotBursts.R
move/R/AAClass.R
move/R/split.R
move/R/moveStack.R
move/R/raster2contour.R
move/R/spTransform.R
move/R/unUsedRecords.R
move/R/Summary.R
move/R/brownianmotionvariancedyn.R
move/R/UDStack.R
move/R/brownianbridgedyn.R
move/R/distance.R
move/vignettes
move/vignettes/move.Rnw
move/vignettes/a.Rdata
move/vignettes/browseMovebank.Rnw
move/MD5
move/build
move/build/vignette.rds
move/DESCRIPTION
move/ChangeLog
move/man
move/man/dynBGB-methods.Rd
move/man/corridor.Rd
move/man/n.indiv.Rd
move/man/searchMovebankStudies.Rd
move/man/idData.Rd
move/man/getVolumeUD.Rd
move/man/angle.Rd
move/man/seglength.Rd
move/man/show.Rd
move/man/emd.Rd
move/man/unUsedRecords.Rd
move/man/brownian.bridge.dyn.Rd
move/man/DBBMMStack-class.Rd
move/man/MovebankLogin-class.Rd
move/man/move-package.Rd
move/man/equalProj.Rd
move/man/as.data.frame.Rd
move/man/trackId.Rd
move/man/getMovebankStudy.Rd
move/man/moveStack.Rd
move/man/MoveStack-class.Rd
move/man/DBBMM-class.Rd
move/man/dynBGB.Rd
move/man/getMovebankData.Rd
move/man/citations.Rd
move/man/burstId.Rd
move/man/turnAngleGc.Rd
move/man/MoveBurst-class.Rd
move/man/getMovebankID.Rd
move/man/ricky.Rd
move/man/burst.Rd
move/man/distance.Rd
move/man/sensor.Rd
move/man/movebankLogin.Rd
move/man/speed.Rd
move/man/UD-class.Rd
move/man/spTransform.Rd
move/man/split.Rd
move/man/unUsedRecords-class.Rd
move/man/dynBGBvariance-methods.Rd
move/man/points.Rd
move/man/lines.Rd
move/man/raster2contour.Rd
move/man/time.Rd
move/man/udData.Rd
move/man/coordinates.Rd
move/man/move2ade.Rd
move/man/UDStack.Rd
move/man/dBMvarianceTmp-class.Rd
move/man/fishers.Rd
move/man/dBGBvariance-class.Rd
move/man/leroy.Rd
move/man/getMovebankAnimals.Rd
move/man/getMovebankSensors.Rd
move/man/getMovebankSensorAttributes.Rd
move/man/contour.Rd
move/man/time.lag.Rd
move/man/interpolateTime.Rd
move/man/brownian.motion.variance.dyn.Rd
move/man/hrBootstrap.Rd
move/man/timestamps.Rd
move/man/Move-class.Rd
move/man/raster.Rd
move/man/timeLag.Rd
move/man/getMovebank.Rd
move/man/getMovebankStudies.Rd
move/man/plotBursts.Rd
move/man/outerProbability.Rd
move/man/move.Rd
move/man/plot.Rd
move/man/getMotionVariance.Rd
move/man/n.locs.Rd
move/man/subset.Rd
move/man/summary.Rd