move: Visualizing and Analyzing Animal Track Data

Contains functions to access movement data stored in 'movebank.org' as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.

AuthorBart Kranstauber <bart.kranstauber@ieu.uzh.ch>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Date of publication2016-08-23 15:25:13
MaintainerBart Kranstauber <bart.kranstauber@ieu.uzh.ch>
LicenseGPL (>= 3)
Version2.1.0
http://computational-ecology.com/main-move.html

View on CRAN

Man pages

angle: angle information from a track or track stack

as.data.frame: Return a Data Frame

brownian.bridge.dyn: Creates a DBBMM object

brownian.motion.variance.dyn: Calculates the dynamic brownian motion variance

burst: Bursting a track

burstId: Returns burstId

citations: Extract the citation of a Move or MoveStack object

contour: Contour plot

coordinates: Extract the track coordinates from a Move/MoveStack object

corridor: Corridor

DBBMM-class: The DBBMM class

DBBMMStack-class: The DBBMMStack class

dBGBvariance-class: Class to store the orthogonal and parallel variance

dBMvarianceTmp-class: dBMvarianceTmp class

distance: distance information from a track or track stack

dynBGB: dynBGB class

dynBGB-methods: Calculation of the dynamic Bivariate Gausian Bridge

dynBGBvariance-methods: calculate variance for a track using a running window

emd: Earth movers distance

equalProj: Checks projections for being equal

fishers: A MoveStack

getMotionVariance: Returns the estimated motion variance

getMovebank: Creates an URL to download Data from Movebank

getMovebankAnimals: Animals, tags and IDs in a Movebank study

getMovebankData: Download data from Movebank

getMovebankID: Study ID

getMovebankSensorAttributes: Available sensor attributes

getMovebankSensors: Information about Movebank sensors

getMovebankStudies: All studies on Movebank

getMovebankStudy: Returns study information

getVolumeUD: Modify a UD raster

hrBootstrap: Calculates and plot the Minimum Convex Polygon for a track

idData: Functions for dealing with the idData

interpolateTime: Interpolate a trajectory

leroy: GPS track data from a fisher

lines: Plotting a track as lines

move: Create a Move object

move2ade: Convert a Move or MoveStack object to adehabitat compatible...

movebankLogin: Login into Movebank

MovebankLogin-class: The MovebankLogin class

MoveBurst-class: MoveBurst class

Move-class: The Move class

move-package: An overview of the functions in this package

moveStack: Creating a MoveStack

MoveStack-class: The MoveStack class

n.indiv: Extract the number of individuals of a Move or MoveStack...

n.locs: Extract the number of locations of a Move or MoveStack object

outerProbability: Calculates the probabilities at the edges of a raster

plot: Plotting track or raster

plotBursts: Plotting the centroids of a track

points: Plotting the points of a track

raster: Extract raster from DBBMM

raster2contour: Convert raster to contour lines

ricky: GPS track data from a fisher

searchMovebankStudies: Search for a study

seglength: Calculates the segment length of a track

sensor: Extract the sensor of a Move or MoveStack object

show: Show a Move object

speed: speed information from a track or track stack

split: Splitting a MoveStack

spTransform: Transform Move object projection method

subset: Returns a single object from a MoveStack

summary: A summary of a DBBMM or DBBMMStack, Move or MoveStack object

time: time information from a track or track stack

time.lag: Calculates the time lags between the coordinates

timeLag: Calculates the time lags between the coordinates

timestamps: Extract the timestamps of a Move or MoveStack object

trackId: Returns trackId

turnAngleGc: Calculates turning angles on great circle tracks

UD-class: The UD class

udData: Dynamic brownian bridges

UDStack: Creating UDStack objects

unUsedRecords: Creates unused records data

unUsedRecords-class: .unUsedRecords and .unUsedRecordsStack class

Files in this package

move
move/inst
move/inst/extdata
move/inst/extdata/createsRDataFile.R
move/inst/extdata/move.RData
move/inst/extdata/leroy.csv.gz
move/inst/doc
move/inst/doc/move.Rnw
move/inst/doc/browseMovebank.pdf
move/inst/doc/move.R
move/inst/doc/browseMovebank.R
move/inst/doc/browseMovebank.Rnw
move/inst/doc/move.pdf
move/tests
move/tests/testthat
move/tests/testthat/test.brownian.bridge.dyn.R
move/tests/testthat/test.move.R
move/tests/testthat/test.emd.R
move/tests/testthat/test.moveAde.R
move/tests/testthat/test.subSet.R
move/tests/testthat/test.measures.R
move/tests/testthat/test.idData.R
move/tests/testthat/test.extentCalc.R
move/tests/testthat/test.getMotionVariance.R
move/tests/testthat/test.burst.R
move/tests/testthat/test.interpolateTime.R
move/tests/testthat/test.dBGB.R
move/tests/testthat/test.turnAngle.R
move/tests/testthat/test.moveStack.R
move/tests/testthat/test.seglength.R
move/tests/testthat/test.citations.R
move/tests/testthat/test.unUsed.R
move/tests/testthat/test.spTransform.R
move/tests/testthat/test.smallFunctions.R
move/tests/testthat/test.storedData.R
move/tests/test-all.R
move/src
move/src/bgbVarRcpp.cpp
move/src/emd_hat_signatures_interface.h
move/src/bgbVar.c
move/src/emd.cpp
move/src/EMD_DEFS.h
move/src/emd_hat_impl.h
move/src/bgb_bbmm.c
move/src/emd_hat.h
move/src/RcppExports.cpp
move/src/min_cost_flow.h
move/src/flow_utils.h
move/NAMESPACE
move/data
move/data/leroydbbmm.RData
move/data/dbbmmstack.RData
move/data/leroy.RData
move/data/datalist
move/data/ricky.RData
move/data/fishers.RData
move/R
move/R/dBGB.R move/R/outerProbability.R move/R/emd.R move/R/speed.R move/R/nindiv.R move/R/timelag.R move/R/getMotionVariance.R move/R/angle.R move/R/subset.R move/R/equalProj.R move/R/turnAngle.R move/R/move2ade.R move/R/burst.R move/R/timestamps.R move/R/citations.R move/R/points.R move/R/plot.R move/R/trackId.R move/R/data.frame.R move/R/spatialLines.R move/R/lineMidpoint.R move/R/WebImport.R move/R/sensor.R move/R/move.R move/R/show.R move/R/seglength.R move/R/burstId.R move/R/idData.R move/R/extractDBMvar.R move/R/extcalc.R move/R/getVolumeUD.R move/R/time.R move/R/contour.R move/R/nlocs.R move/R/corridor.R move/R/RcppExports.R move/R/lines.R move/R/hrBootstrap.R move/R/interpolateTime.R move/R/print.R move/R/plotBursts.R move/R/AAClass.R move/R/split.R move/R/moveStack.R move/R/raster2contour.R move/R/spTransform.R move/R/unUsedRecords.R move/R/Summary.R move/R/brownianmotionvariancedyn.R move/R/UDStack.R move/R/brownianbridgedyn.R move/R/distance.R
move/vignettes
move/vignettes/move.Rnw
move/vignettes/a.Rdata
move/vignettes/browseMovebank.Rnw
move/MD5
move/build
move/build/vignette.rds
move/DESCRIPTION
move/ChangeLog
move/man
move/man/dynBGB-methods.Rd move/man/corridor.Rd move/man/n.indiv.Rd move/man/searchMovebankStudies.Rd move/man/idData.Rd move/man/getVolumeUD.Rd move/man/angle.Rd move/man/seglength.Rd move/man/show.Rd move/man/emd.Rd move/man/unUsedRecords.Rd move/man/brownian.bridge.dyn.Rd move/man/DBBMMStack-class.Rd move/man/MovebankLogin-class.Rd move/man/move-package.Rd move/man/equalProj.Rd move/man/as.data.frame.Rd move/man/trackId.Rd move/man/getMovebankStudy.Rd move/man/moveStack.Rd move/man/MoveStack-class.Rd move/man/DBBMM-class.Rd move/man/dynBGB.Rd move/man/getMovebankData.Rd move/man/citations.Rd move/man/burstId.Rd move/man/turnAngleGc.Rd move/man/MoveBurst-class.Rd move/man/getMovebankID.Rd move/man/ricky.Rd move/man/burst.Rd move/man/distance.Rd move/man/sensor.Rd move/man/movebankLogin.Rd move/man/speed.Rd move/man/UD-class.Rd move/man/spTransform.Rd move/man/split.Rd move/man/unUsedRecords-class.Rd move/man/dynBGBvariance-methods.Rd move/man/points.Rd move/man/lines.Rd move/man/raster2contour.Rd move/man/time.Rd move/man/udData.Rd move/man/coordinates.Rd move/man/move2ade.Rd move/man/UDStack.Rd move/man/dBMvarianceTmp-class.Rd move/man/fishers.Rd move/man/dBGBvariance-class.Rd move/man/leroy.Rd move/man/getMovebankAnimals.Rd move/man/getMovebankSensors.Rd move/man/getMovebankSensorAttributes.Rd move/man/contour.Rd move/man/time.lag.Rd move/man/interpolateTime.Rd move/man/brownian.motion.variance.dyn.Rd move/man/hrBootstrap.Rd move/man/timestamps.Rd move/man/Move-class.Rd move/man/raster.Rd move/man/timeLag.Rd move/man/getMovebank.Rd move/man/getMovebankStudies.Rd move/man/plotBursts.Rd move/man/outerProbability.Rd move/man/move.Rd move/man/plot.Rd move/man/getMotionVariance.Rd move/man/n.locs.Rd move/man/subset.Rd move/man/summary.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.