DBBMMStack-class: The DBBMMStack class

In move: Visualizing and Analyzing Animal Track Data

The DBBMMStack class

Description

The DBBMMStack object is created within the brownian.bridge.dyn function from a MoveStack or dBMvarianceStack object. It contains a dBMvarianceStack object and a raster with probabilities.

Slots

crs

part of the Raster-class

DBMvar

Object of class "dBMvarianceStack": includes the window.size, margin, means, in.windows, break.list, and points of interest

ext

the extension factor set by the user

extent

part of the Raster-class

filename

part of the Raster-class

layers

part of the Raster-class

method

the method that was used to calculate the utilization distribution, e.g. dynamic Brwonian Bridge

ncols

part of the Raster-class

nrows

part of the Raster-class

rotated

part of the Raster-class

rotation

part of the Raster-class

title

part of the Raster-class

z

part of the Raster-class

Methods

contour

signature(object = "DBBMMStack"): adds a contour line to a plot

emd

signature(object = "DBBMMStack"): quantifies similarity between utilization distributions

equalProj

signature(object = "DBBMMStack"): checks whether all objects of a list are in the same projection

getMotionVariance

signature(object = "DBBMMStack"): extracts the estimated motion variance

getVolumeUD

signature(object = "DBBMMStack"): modifies the UD raster

outerProbability

signature(object = "DBBMMStack"): calculates the animal occurrence probabilities at the border of the raster

plot

signature(object = "DBBMMStack"): plots the raster from a DBBMMStack object with re-size insensitive proportions

raster2contour

signature(object = "DBBMMStack"): converts a raster to contour lines

show

signature(object = "DBBMMStack"): displays summary the DBBMMStack object

split

signature(object = "DBBMMStack"): splits a DBBMMStack into a list of DBBMM objects

summary

signature(object = "DBBMMStack"): summarizes the information of the raster from a DBBMMStack object

subset

signature(object = "DBBMMStack"): subsets the DBBMMStack object

Note

The DBBMMStack object contains a dBMvarianceStack and a .UDStack object which can be used to program against.

Author(s)

Marco Smolla & Anne Scharf

move documentation built on Sept. 29, 2024, 9:06 a.m.