moveHMM: Animal Movement Modelling using Hidden Markov Models

Provides tools for animal movement modelling using hidden Markov models. These include processing of tracking data, fitting hidden Markov models to movement data, visualization of data and fitted model, decoding of the state process...

AuthorTheo Michelot, Roland Langrock, Toby Patterson, Eric Rexstad (ctb)
Date of publication2017-01-11 17:30:19
MaintainerTheo Michelot <tmichelot1@sheffield.ac.uk>
LicenseGPL-3
Version1.3
https://github.com/TheoMichelot/moveHMM, https://cran.r-project.org/ package=moveHMM

View on CRAN

Files in this package

moveHMM
moveHMM/inst
moveHMM/inst/CITATION
moveHMM/inst/doc
moveHMM/inst/doc/moveHMM-guide.pdf
moveHMM/inst/doc/moveHMM-guide.Rnw
moveHMM/inst/doc/moveHMM-guide.R
moveHMM/tests
moveHMM/tests/testthat.R
moveHMM/tests/testthat
moveHMM/tests/testthat/test_moveHMM.R
moveHMM/tests/testthat/test_w2n.R
moveHMM/tests/testthat/test_n2w.R
moveHMM/tests/testthat/test_moveData.R
moveHMM/tests/testthat/test_simData.R
moveHMM/tests/testthat/test_prepData.R
moveHMM/tests/testthat/test_CI.R
moveHMM/tests/testthat/test_nLogLike.R
moveHMM/tests/testthat/test_densities.R
moveHMM/tests/testthat/test_logAlpha.R
moveHMM/tests/testthat/test_fitHMM.R
moveHMM/tests/testthat/test_parDef.R
moveHMM/tests/testthat/test_trMatrix_rcpp.R
moveHMM/tests/testthat/test_allProbs.R
moveHMM/tests/testthat/test_turnAngle.R
moveHMM/tests/testthat/test_viterbi.R
moveHMM/tests/testthat/test_plot_moveData.R
moveHMM/src
moveHMM/src/Makevars
moveHMM/src/densities.h
moveHMM/src/nLogLike.cpp
moveHMM/src/trMatrix.cpp
moveHMM/src/RcppExports.cpp
moveHMM/NAMESPACE
moveHMM/data
moveHMM/data/example.RData
moveHMM/R
moveHMM/R/nLogLike.R moveHMM/R/plotPR.R moveHMM/R/AIC_moveHMM.R moveHMM/R/stateProbs.R moveHMM/R/turnAngle.R moveHMM/R/simData.R moveHMM/R/allProbs.R moveHMM/R/parDef.R moveHMM/R/angleCI.R moveHMM/R/prepData.R moveHMM/R/moveHMM.R moveHMM/R/pseudoRes.R moveHMM/R/plotStates.R moveHMM/R/viterbi.R moveHMM/R/n2w.R moveHMM/R/fitHMM.R moveHMM/R/RcppExports.R moveHMM/R/exGen.R moveHMM/R/logBeta.R moveHMM/R/moveData.R moveHMM/R/plot_moveData.R moveHMM/R/logAlpha.R moveHMM/R/CI.R moveHMM/R/plot_moveHMM.R moveHMM/R/w2n.R moveHMM/R/plotSat.R moveHMM/R/print_moveHMM.R moveHMM/R/summary_moveData.R
moveHMM/vignettes
moveHMM/vignettes/step_angle_figure.pdf
moveHMM/vignettes/moveHMM-guide.Rnw
moveHMM/vignettes/plotSat.pdf
moveHMM/vignettes/struct.pdf
moveHMM/vignettes/models.RData
moveHMM/README.md
moveHMM/MD5
moveHMM/build
moveHMM/build/vignette.rds
moveHMM/DESCRIPTION
moveHMM/man
moveHMM/man/dlnorm_rcpp.Rd moveHMM/man/allProbs.Rd moveHMM/man/moveData.Rd moveHMM/man/dgamma_rcpp.Rd moveHMM/man/stateProbs.Rd moveHMM/man/plotPR.Rd moveHMM/man/plot.moveData.Rd moveHMM/man/plotStates.Rd moveHMM/man/dexp_rcpp.Rd moveHMM/man/summary.moveData.Rd moveHMM/man/viterbi.Rd moveHMM/man/dwrpcauchy_rcpp.Rd moveHMM/man/is.moveHMM.Rd moveHMM/man/plotSat.Rd moveHMM/man/trMatrix_rcpp.Rd moveHMM/man/turnAngle.Rd moveHMM/man/logAlpha.Rd moveHMM/man/prepData.Rd moveHMM/man/print.moveHMM.Rd moveHMM/man/exGen.Rd moveHMM/man/pseudoRes.Rd moveHMM/man/fitHMM.Rd moveHMM/man/parDef.Rd moveHMM/man/logBeta.Rd moveHMM/man/CI.Rd moveHMM/man/nLogLike.Rd moveHMM/man/is.moveData.Rd moveHMM/man/angleCI.Rd moveHMM/man/simData.Rd moveHMM/man/w2n.Rd moveHMM/man/example.Rd moveHMM/man/moveHMM.Rd moveHMM/man/dvm_rcpp.Rd moveHMM/man/nLogLike_rcpp.Rd moveHMM/man/dweibull_rcpp.Rd moveHMM/man/plot.moveHMM.Rd moveHMM/man/AIC.moveHMM.Rd moveHMM/man/n2w.Rd

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