moveHMM: Animal Movement Modelling using Hidden Markov Models

Provides tools for animal movement modelling using hidden Markov models. These include processing of tracking data, fitting hidden Markov models to movement data, visualization of data and fitted model, decoding of the state process...

AuthorTheo Michelot, Roland Langrock, Toby Patterson, Eric Rexstad (ctb)
Date of publication2017-01-11 17:30:19
MaintainerTheo Michelot <tmichelot1@sheffield.ac.uk>
LicenseGPL-3
Version1.3
https://github.com/TheoMichelot/moveHMM, https://cran.r-project.org/ package=moveHMM

View on CRAN

Functions

AIC.moveHMM Man page
allProbs Man page
angleCI Man page
CI Man page
dexp_rcpp Man page
dgamma_rcpp Man page
dlnorm_rcpp Man page
dvm_rcpp Man page
dweibull_rcpp Man page
dwrpcauchy_rcpp Man page
example Man page
exGen Man page
fitHMM Man page
is.moveData Man page
is.moveHMM Man page
logAlpha Man page
logBeta Man page
moveData Man page
moveHMM Man page
n2w Man page
nLogLike Man page
nLogLike_rcpp Man page
parDef Man page
plot.moveData Man page
plot.moveHMM Man page
plotPR Man page
plotSat Man page
plotStates Man page
prepData Man page
print.moveHMM Man page
pseudoRes Man page
simData Man page
stateProbs Man page
summary.moveData Man page
trMatrix_rcpp Man page
turnAngle Man page
viterbi Man page
w2n Man page

Files

moveHMM
moveHMM/inst
moveHMM/inst/CITATION
moveHMM/inst/doc
moveHMM/inst/doc/moveHMM-guide.pdf
moveHMM/inst/doc/moveHMM-guide.Rnw
moveHMM/inst/doc/moveHMM-guide.R
moveHMM/tests
moveHMM/tests/testthat.R
moveHMM/tests/testthat
moveHMM/tests/testthat/test_moveHMM.R
moveHMM/tests/testthat/test_w2n.R
moveHMM/tests/testthat/test_n2w.R
moveHMM/tests/testthat/test_moveData.R
moveHMM/tests/testthat/test_simData.R
moveHMM/tests/testthat/test_prepData.R
moveHMM/tests/testthat/test_CI.R
moveHMM/tests/testthat/test_nLogLike.R
moveHMM/tests/testthat/test_densities.R
moveHMM/tests/testthat/test_logAlpha.R
moveHMM/tests/testthat/test_fitHMM.R
moveHMM/tests/testthat/test_parDef.R
moveHMM/tests/testthat/test_trMatrix_rcpp.R
moveHMM/tests/testthat/test_allProbs.R
moveHMM/tests/testthat/test_turnAngle.R
moveHMM/tests/testthat/test_viterbi.R
moveHMM/tests/testthat/test_plot_moveData.R
moveHMM/src
moveHMM/src/Makevars
moveHMM/src/densities.h
moveHMM/src/nLogLike.cpp
moveHMM/src/trMatrix.cpp
moveHMM/src/RcppExports.cpp
moveHMM/NAMESPACE
moveHMM/data
moveHMM/data/example.RData
moveHMM/R
moveHMM/R/nLogLike.R moveHMM/R/plotPR.R moveHMM/R/AIC_moveHMM.R moveHMM/R/stateProbs.R moveHMM/R/turnAngle.R moveHMM/R/simData.R moveHMM/R/allProbs.R moveHMM/R/parDef.R moveHMM/R/angleCI.R moveHMM/R/prepData.R moveHMM/R/moveHMM.R moveHMM/R/pseudoRes.R moveHMM/R/plotStates.R moveHMM/R/viterbi.R moveHMM/R/n2w.R moveHMM/R/fitHMM.R moveHMM/R/RcppExports.R moveHMM/R/exGen.R moveHMM/R/logBeta.R moveHMM/R/moveData.R moveHMM/R/plot_moveData.R moveHMM/R/logAlpha.R moveHMM/R/CI.R moveHMM/R/plot_moveHMM.R moveHMM/R/w2n.R moveHMM/R/plotSat.R moveHMM/R/print_moveHMM.R moveHMM/R/summary_moveData.R
moveHMM/vignettes
moveHMM/vignettes/step_angle_figure.pdf
moveHMM/vignettes/moveHMM-guide.Rnw
moveHMM/vignettes/plotSat.pdf
moveHMM/vignettes/struct.pdf
moveHMM/vignettes/models.RData
moveHMM/README.md
moveHMM/MD5
moveHMM/build
moveHMM/build/vignette.rds
moveHMM/DESCRIPTION
moveHMM/man
moveHMM/man/dlnorm_rcpp.Rd moveHMM/man/allProbs.Rd moveHMM/man/moveData.Rd moveHMM/man/dgamma_rcpp.Rd moveHMM/man/stateProbs.Rd moveHMM/man/plotPR.Rd moveHMM/man/plot.moveData.Rd moveHMM/man/plotStates.Rd moveHMM/man/dexp_rcpp.Rd moveHMM/man/summary.moveData.Rd moveHMM/man/viterbi.Rd moveHMM/man/dwrpcauchy_rcpp.Rd moveHMM/man/is.moveHMM.Rd moveHMM/man/plotSat.Rd moveHMM/man/trMatrix_rcpp.Rd moveHMM/man/turnAngle.Rd moveHMM/man/logAlpha.Rd moveHMM/man/prepData.Rd moveHMM/man/print.moveHMM.Rd moveHMM/man/exGen.Rd moveHMM/man/pseudoRes.Rd moveHMM/man/fitHMM.Rd moveHMM/man/parDef.Rd moveHMM/man/logBeta.Rd moveHMM/man/CI.Rd moveHMM/man/nLogLike.Rd moveHMM/man/is.moveData.Rd moveHMM/man/angleCI.Rd moveHMM/man/simData.Rd moveHMM/man/w2n.Rd moveHMM/man/example.Rd moveHMM/man/moveHMM.Rd moveHMM/man/dvm_rcpp.Rd moveHMM/man/nLogLike_rcpp.Rd moveHMM/man/dweibull_rcpp.Rd moveHMM/man/plot.moveHMM.Rd moveHMM/man/AIC.moveHMM.Rd moveHMM/man/n2w.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.