Man pages for moveHMM
Animal Movement Modelling using Hidden Markov Models

AIC.moveHMMAIC
allProbsMatrix of all probabilities
angleCIConfidence intervals for angle parameters
CIConfidence intervals
dexp_rcppExponential density function
dgamma_rcppGamma density function
dlnorm_rcppLog-normal density function
dvm_rcppVon Mises density function
dweibull_rcppWeibull density function
dwrpcauchy_rcppWrapped Cauchy density function
elk_dataElk data set from Morales et al. (2004, Ecology)
exampleExample dataset
exGenExample data simulation
fitHMMFit an HMM to the data
getPaletteDiscrete colour palette for states
getPlotDataData to produce plots of fitted model
haggis_dataWild haggis data set from Michelot et al. (2016, Methods Eco...
is.moveDataIs moveData
is.moveHMMIs moveHMM
logAlphaForward log-probabilities
logBetaBackward log-probabilities
moveDataConstructor of 'moveData' objects
moveHMMConstructor of 'moveHMM' objects
n2wScaling function: natural to working parameters.
nLogLikeNegative log-likelihood function
nLogLike_rcppNegative log-likelihood
parDefParameters definition
plot.moveDataPlot 'moveData'
plot.moveHMMPlot 'moveHMM'
plotPRPlot pseudo-residuals
plotSatPlot observations on satellite image
plotStatesPlot states
plotStationaryPlot stationary state probabilities
predictStationaryPredict stationary state probabilities
predictTPMPredict transition probabilities for new covariate values
prepDataPreprocessing of the tracking data
print.moveHMMPrint 'moveHMM'
pseudoResPseudo-residuals
simDataSimulation tool
stateProbsState probabilities
stationaryStationary state probabilities
summary.moveDataSummary 'moveData'
trMatrix_rcppTransition probability matrix
turnAngleTurning angle
viterbiViterbi algorithm
w2nScaling function: working to natural parameters
moveHMM documentation built on May 31, 2023, 6:13 p.m.