Description Usage Arguments Value Examples
Used in functions viterbi
, logAlpha
, logBeta
.
1 2 
data 
Object 
nbStates 
Number of states of the HMM. 
stepDist 
Name of the distribution of the step lengths. 
angleDist 
Name of the distribution of the turning angles. Set to "none" if the angle distribution should not be estimated. 
stepPar 
Parameters of the step length distribution. Must be provided in a
matrix with one row for each parameter (in the order expected by the pdf of 
anglePar 
Parameters of the turning angle distribution. Must be provided in a
matrix with one row for each parameter (in the order expected by the pdf of 
zeroInflation 

knownStates 
Vector of values of the state process which are known prior to fitting the model (if any). Default: NULL (states are not known). This should be a vector with length the number of rows of 'data'; each element should either be an integer (the value of the known states) or NA if the state is not known. 
Matrix of all probabilities.
1 2 3 4 5 6 7 8 9 10 11 12  ## Not run:
stepPar < c(1,10,1,5,0.2,0.3)
anglePar < c(0,pi,0.5,2)
stepDist < "gamma"
angleDist < "vm"
data < simData(nbAnimals=5,nbStates=2,stepDist=stepDist,angleDist=angleDist,stepPar=stepPar,
anglePar=anglePar,nbCovs=2,zeroInflation=TRUE)
P < allProbs(data=data,nbStates=2,stepDist=stepDist,angleDist=angleDist,
stepPar=matrix(stepPar,ncol=2,byrow=TRUE),anglePar=matrix(anglePar,ncol=2,
byrow=TRUE),zeroInflation=TRUE)
## End(Not run)

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