FASTmrEMMA: To perform GWAS with FASTmrEMMA method

In mrMLM.GUI: Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface

Description

FAST multi-locus random-SNP-effect EMMA

Usage

FASTmrEMMA(gen,phe,outATCG,genRaw,kk,psmatrix,svpal,svmlod,Genformat,Likelihood,CLO)

Arguments

gen	genotype matrix.
phe	phenotype matrix.
outATCG	genotype for code 1.
genRaw	raw genotype.
kk	kinship matrix.
psmatrix	population structure matrix.
svpal	Critical P-value for selecting variable.
svmlod	Critical LOD score for significant QTN.
Genformat	Format for genotypic codes.
Likelihood	restricted maximum likelihood (REML) and maximum likelihood (ML).
CLO	number of CPU.

Author(s)

Zhang Ya-Wen, Li Pei, and Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<[e-mail]>

Examples

G1=data(fmegen)
P1=data(mrphe)
G2=data(fmegenraw)
result=FASTmrEMMA(fmegen,mrphe,outATCG=NULL,fmegenraw,kk=NULL,
psmatrix=NULL,0.005,3,1,Likelihood="REML",CLO=1)

mrMLM.GUI documentation built on Oct. 23, 2020, 8:13 p.m.