FASTmrEMMA: To perform GWAS with FASTmrEMMA method

Description Usage Arguments Author(s) Examples

View source: R/FASTmrEMMA.R

Description

FAST multi-locus random-SNP-effect EMMA

Usage

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FASTmrEMMA(gen,phe,outATCG,genRaw,kk,psmatrix,svpal,svmlod,Genformat,Likelihood,CLO)

Arguments

gen

genotype matrix.

phe

phenotype matrix.

outATCG

genotype for code 1.

genRaw

raw genotype.

kk

kinship matrix.

psmatrix

population structure matrix.

svpal

Critical P-value for selecting variable.

svmlod

Critical LOD score for significant QTN.

Genformat

Format for genotypic codes.

Likelihood

restricted maximum likelihood (REML) and maximum likelihood (ML).

CLO

number of CPU.

Author(s)

Zhang Ya-Wen, Li Pei, and Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<soyzhang@mail.hzau.edu.cn>

Examples

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G1=data(fmegen)
P1=data(mrphe)
G2=data(fmegenraw)
result=FASTmrEMMA(fmegen,mrphe,outATCG=NULL,fmegenraw,kk=NULL,
psmatrix=NULL,0.005,3,1,Likelihood="REML",CLO=1)

mrMLM.GUI documentation built on Oct. 23, 2020, 8:13 p.m.