mrMLMFun: To perform GWAS with mrMLM method

In mrMLM.GUI: Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface

Description

multi-locus random-SNP-effect Mixed Linear Model

Usage

mrMLMFun(gen,phe,outATCG,genRaw,kk,psmatrix,svpal,svrad,svmlod,Genformat,CLO)

Arguments

gen	genotype matrix.
phe	phenotype matrix.
outATCG	genotype for code 1.
genRaw	raw genotype.
kk	kinship matrix.
psmatrix	population structure matrix.
svpal	Critical P-value for selecting variable
svrad	Search Radius in search of potentially associated QTN.
svmlod	Critical LOD score for significant QTN.
Genformat	Format for genotypic codes.
CLO	number of CPU.

Author(s)

Zhang Ya-Wen, Li Pei, and Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<[e-mail]>

Examples

G1=data(mrgen)
P1=data(mrphe)
G2=data(mrgenraw)
result=mrMLMFun(mrgen,mrphe,outATCG=NULL,mrgenraw,kk=NULL,psmatrix=NULL,
0.01,20,3,1,CLO=1)

mrMLM.GUI documentation built on Oct. 23, 2020, 8:13 p.m.