pLARmEB: To perform GWAS with pLARmEB method

In mrMLM.GUI: Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface

Description

polygene-background-control-based least angle regression plus Empirical Bayes

Usage

pLARmEB(gen,phe,outATCG,genRaw,kk,psmatrix,CriLOD,lars1,Genformat,Bootstrap,CLO)

Arguments

gen	genotype matrix.
phe	phenotype matrix.
outATCG	genotype for code 1.
genRaw	raw genotype.
kk	kinship matrix.
psmatrix	population structure matrix.
CriLOD	Critical LOD score for significant QTN.
lars1	No. of potentially associated variables selected by LARS.
Genformat	Format for genotypic codes.
Bootstrap	Bootstrap=FALSE indicates the analysis of only real dataset, Bootstrap=TRUE indicates the analysis of both real dataset and four resampling datasets.
CLO	number of CPU.

Author(s)

Zhang Ya-Wen, Li Pei, and Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<[e-mail]>

Examples

G1=data(mrgen)
P1=data(mrphe)
G2=data(mrgenraw)
result=pLARmEB(mrgen,mrphe,outATCG=NULL,mrgenraw,kk=NULL,psmatrix=NULL,
3,20,1,Bootstrap=FALSE,CLO=1)

mrMLM.GUI documentation built on Oct. 23, 2020, 8:13 p.m.