plotMultiNMR: A function for plotting NMR spectra.

View source: R/mrbin.R

plotMultiNMRR Documentation

A function for plotting NMR spectra.

Description

This function plots the current NMR spectrum. If no parameters are provided, parameters are read from the mrbin.env environment variables, set by mrbin. To change the plot, use zoom(), zoomIn(), zoomOut(), intPlus(), intMin(), left(), right(). For 2D data use additionally: contMin(), contPlus(), up(), down()

Usage

plotMultiNMR(
  region = NULL,
  rectangleRegions = NULL,
  rectangleColors = c("green", "orange", "blue", "red", "yellow", "gray", "purple"),
  rectangleFront = FALSE,
  polygonRegion = NULL,
  maxPlots = Inf,
  color = NULL,
  add = FALSE,
  showGrid = FALSE,
  manualScale = TRUE,
  plotTitle = "",
  restrictToRange = FALSE,
  enableSplit = TRUE,
  dimension = NULL
)

Arguments

region

A vector defining the plot region (left, right, top, bottom)

rectangleRegions

A 4-column matrix defining areas where to plot rectangles

rectangleColors

Define colors for the rectangles

rectangleFront

Plot rectangles in front of spectrum rather than in background (only 2D)

polygonRegion

Defines 4 corners of a polygon to be plotted

maxPlots

The maximum number of 2D plots to be overlaid

color

Defines the color of the spectrum plot. If NULL, a rainbow theme is used for 2D NMR

add

If TRUE, additional spectrum plots are overlaid with the current plot

showGrid

Shows a grid of data points. Defaults to FALSE

manualScale

If TRUE, scaling factor is taken from environment variables

plotTitle

Defines the main title of the plot

restrictToRange

Restrict plot area to range of available data points. Defaults to FALSE

enableSplit

Allow split plots for showing 1D and 2D spectra simultaneously

dimension

If not provided, this will be taken from package environment

Value

None

Examples

mrbin(silent=TRUE,setDefault=TRUE,parameters=list(dimension="1D",binwidth1D=.1,
         PQNScaling="No",noiseRemoval="No",trimZeros="No",tryParallel=FALSE,
         fixNegatives="No",logTrafo="No",PCA="No",verbose=TRUE,
         NMRfolders=system.file("extdata/1/10/pdata/10",package="mrbin")))
plotMultiNMR()

mrbin documentation built on Jan. 23, 2023, 5:41 p.m.