plotCells: Plot the identified outlier cell(s) in the voronoi...

In muHVT: Constructing Hierarchical Voronoi Tessellations and Overlay Heatmap for Data Analysis

Plot the identified outlier cell(s) in the voronoi tessellations map. Plotting function to construct hierarchical voronoi tessellations and highlight the cells using the compressed HVT map.

Description

Plot the identified outlier cell(s) in the voronoi tessellations map.

Plotting function to construct hierarchical voronoi tessellations and highlight the cells using the compressed HVT map.

Usage

plotCells(
  plot.cells,
  hvt.map,
  line.width = c(0.6),
  color.vec = c("#141B41"),
  pch1 = 21,
  centroid.size = 0.5,
  title = NULL,
  maxDepth = 1
)

Arguments

plot.cells	Vector. A vector indicating the cells to be highlighted in the map
hvt.map	List. A list containing the output of HVT function which has the details of the tessellations to be plotted.
line.width	Numeric Vector. A vector indicating the line widths of the tessellation boundaries for each level.
color.vec	Vector. A vector indicating the colors of the boundaries of the tessellations at each level.
pch1	Numeric. Symbol type of the centroids of the tessellations (parent levels). Refer points. (default = 21)
centroid.size	Numeric. Size of centroids of first level tessellations. (default = 3)
title	String. Set a title for the plot. (default = NULL)
maxDepth	Numeric. An integer indicating the number of levels. (default = NULL)

Author(s)

Shantanu Vaidya <[e-mail]>

See Also

HVT
hvtHmap

muHVT documentation built on March 7, 2023, 6:38 p.m.